Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0622500-00 | Rice | cytosol | 55.86 | 16.32 |
| Solyc03g061600.2.1 | Tomato | endoplasmic reticulum | 86.49 | 14.75 |
| PGSC0003DMT400006585 | Potato | cytosol | 86.49 | 12.53 |
| AT2G20000.1 | Thale cress | cytosol | 70.27 | 10.48 |
| Bra039034.1-P | Field mustard | cytosol | 69.37 | 10.36 |
| CDY35917 | Canola | cytosol | 69.37 | 10.36 |
| CDY40468 | Canola | cytosol | 69.37 | 10.35 |
| KRH01476 | Soybean | cytosol | 70.27 | 10.32 |
| VIT_11s0016g03260.t01 | Wine grape | cytosol | 70.27 | 10.25 |
| KRG93804 | Soybean | cytosol | 63.06 | 9.25 |
| KRH18292 | Soybean | nucleus | 61.26 | 8.98 |
| GSMUA_Achr1P19740_001 | Banana | cytosol | 58.56 | 8.64 |
| TraesCS7B01G299300.1 | Wheat | cytosol, mitochondrion | 53.15 | 8.17 |
| Zm00001d042523_P001 | Maize | cytosol | 54.95 | 8.12 |
| HORVU7Hr1G093620.9 | Barley | cytosol | 54.05 | 7.97 |
| KXG33895 | Sorghum | cytosol | 54.05 | 7.96 |
| TraesCS7A01G398600.1 | Wheat | cytosol | 53.15 | 7.78 |
| TraesCS7D01G392900.2 | Wheat | cytosol | 53.15 | 7.78 |
| PGSC0003DMT400063189 | Potato | cytosol | 14.41 | 2.94 |
| KRH41728 | Soybean | extracellular, vacuole | 0.0 | 0.0 |
| CDY35918 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400083452 | EnsemblPlantsGene:PGSC0003DMG400033320 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat |
| PANTHER:PTHR12558 | PANTHER:PTHR12558:SF13 | PFAM:PF13181 | PFscan:PS50005 | PFscan:PS50293 | PGSC:PGSC0003DMG400033320 |
| SUPFAM:SSF48452 | UniParc:UPI000294F12D | UniProt:M1D6W6 | MapMan:35.1 | : | : |
Description
Cdc27B [Source:PGSC_GENE;Acc:PGSC0003DMG400033320]
Coordinates
chr00:+:45289873..45290573
Molecular Weight (calculated)
12508.3 Da
IEP (calculated)
6.679
GRAVY (calculated)
-0.133
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGQKNEEAL EVMELAIVAD KKNPLPMYQK ANILVSTESF DAALEVLEEL KEHAPRESSV YALMGRIYKR RNMYDKAMLH FGVALDLKPS ATDVATIKVI
101: AHLHIIAHRC T
101: AHLHIIAHRC T
001: MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP
Arabidopsis Description
CDC27BCell division cycle protein 27 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGU6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.