Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY40468 | Canola | cytosol | 89.52 | 89.52 |
Bra039034.1-P | Field mustard | cytosol | 89.25 | 89.37 |
CDY35917 | Canola | cytosol | 89.25 | 89.37 |
KRH41728 | Soybean | extracellular, vacuole | 4.84 | 76.6 |
PGSC0003DMT400083452 | Potato | cytosol | 10.48 | 70.27 |
VIT_11s0016g03260.t01 | Wine grape | cytosol | 70.56 | 68.99 |
PGSC0003DMT400006585 | Potato | cytosol | 68.68 | 66.71 |
Solyc03g061590.2.1 | Tomato | cytosol | 15.99 | 65.75 |
Os06t0622500-00 | Rice | cytosol | 31.45 | 61.58 |
GSMUA_Achr1P19740_001 | Banana | cytosol | 59.54 | 58.91 |
Zm00001d042523_P001 | Maize | cytosol | 55.91 | 55.39 |
KXG33895 | Sorghum | cytosol | 55.65 | 54.91 |
TraesCS7A01G398600.1 | Wheat | cytosol | 55.78 | 54.75 |
TraesCS7D01G392900.2 | Wheat | cytosol | 55.65 | 54.62 |
TraesCS7B01G299300.1 | Wheat | cytosol, mitochondrion | 52.96 | 54.57 |
HORVU7Hr1G093620.9 | Barley | cytosol | 53.09 | 52.46 |
AT3G16320.1 | Thale cress | cytosol | 45.56 | 46.57 |
AT3G48150.1 | Thale cress | cytosol | 15.19 | 19.52 |
Protein Annotations
Gene3D:1.25.40.10 | MapMan:13.3.4.1.1.2.1 | EntrezGene:816519 | ProteinID:AAD24396.1 | ProteinID:AEC06953.1 | EMBL:AJ487669 |
ArrayExpress:AT2G20000 | EnsemblPlantsGene:AT2G20000 | RefSeq:AT2G20000 | TAIR:AT2G20000 | RefSeq:AT2G20000-TAIR-G | EnsemblPlants:AT2G20000.1 |
TAIR:AT2G20000.1 | EMBL:AY062470 | EMBL:AY128780 | Unigene:At.39758 | ncoils:Coil | GO:GO:0000003 |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0005680 | GO:GO:0005737 | GO:GO:0005819 | GO:GO:0005856 | GO:GO:0006464 |
GO:GO:0007049 | GO:GO:0007275 | GO:GO:0007346 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009504 |
GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009987 |
GO:GO:0010071 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0030154 | GO:GO:0048364 | GO:GO:0048829 |
GO:GO:0051301 | Symbol:HBT | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | RefSeq:NP_849994.1 |
PFAM:PF00515 | PFAM:PF12895 | PFAM:PF13181 | PFAM:PF13432 | PFAM:PF14559 | PO:PO:0000005 |
PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0007631 |
PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
PO:PO:0025281 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF13 | UniProt:Q8LGU6 |
SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_repeat |
UniParc:UPI000004C47C | SEG:seg | : | : | : | : |
Description
CDC27BCell division cycle protein 27 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGU6]
Coordinates
chr2:-:8631959..8637300
Molecular Weight (calculated)
83072.7 Da
IEP (calculated)
6.549
GRAVY (calculated)
-0.356
Length
744 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.