Factsheet for VIT_11s0016g03260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0181g00190.t01
VIT_00s0181g00210.t01
VIT_01s0026g02730.t01
VIT_02s0012g02000.t01
VIT_02s0025g04680.t01
VIT_03s0017g00150.t01
VIT_04s0023g01940.t01
VIT_05s0020g01730.t01
VIT_07s0005g03000.t01
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_08s0007g07790.t01
VIT_11s0016g03260.t01
VIT_12s0028g00720.t01
VIT_12s0028g00740.t01
VIT_12s0057g00240.t01
VIT_13s0019g01090.t01
VIT_13s0019g01840.t01
VIT_19s0014g01170.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20000.1	VIT_02s0012g02000.t01	AT1G06590.1	20706207
AT2G20000.1	VIT_12s0028g00720.t01	AT1G06590.1	20706207
AT2G20000.1	VIT_12s0028g00740.t01	AT1G06590.1	20706207
AT2G20000.1	VIT_19s0014g01170.t01	AT1G78770.1	20706207
AT2G20000.1	VIT_01s0026g02730.t01	AT2G04660.1	17944809
AT2G20000.1	VIT_04s0023g01940.t01	AT2G18290.1	17944809
AT2G20000.1	VIT_11s0016g03260.t01	AT2G20000.1	17944809
AT2G20000.1	VIT_05s0020g01730.t01	AT2G39090.1	20706207
AT2G20000.1	VIT_08s0007g07790.t01	AT2G42260.1	20706207
AT2G20000.1	VIT_03s0017g00150.t01	AT3G11270.1	20706207
AT2G20000.1	VIT_07s0005g03000.t01	AT3G11270.1	20706207
AT2G20000.1	VIT_07s0031g02330.t01	AT3G48150.1	20706207
AT2G20000.1	VIT_07s0130g00490.t01	AT3G48150.1	20706207
AT2G20000.1	VIT_13s0019g01090.t01	AT3G55440.1	20706207
AT2G20000.1	VIT_02s0025g04680.t01	AT4G11920.1	17944809
AT2G20000.1	VIT_00s0181g00190.t01	AT4G21530.1	20706207
AT2G20000.1	VIT_00s0181g00210.t01	AT4G21530.1	20706207
AT2G20000.1	VIT_12s0057g00240.t01	AT4G28230.1	20706207
AT2G20000.1	VIT_13s0019g01840.t01	AT5G13840.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41728	Soybean	extracellular, vacuole	4.99	80.85
KRH01476	Soybean	cytosol	75.3	75.79
CDY40468	Canola	cytosol	70.7	72.31
Bra039034.1-P	Field mustard	cytosol	70.56	72.27
CDY35917	Canola	cytosol	70.56	72.27
KRG93804	Soybean	cytosol	71.62	71.99
PGSC0003DMT400006585	Potato	cytosol	72.27	71.8
KRH18292	Soybean	nucleus	71.35	71.73
AT2G20000.1	Thale cress	cytosol	68.99	70.56
PGSC0003DMT400083452	Potato	cytosol	10.25	70.27
Solyc03g061590.2.1	Tomato	cytosol	16.16	67.96
Os06t0622500-00	Rice	cytosol	32.85	65.79
GSMUA_Achr1P19740_001	Banana	cytosol	63.21	63.96
CDY35918	Canola	cytosol	20.37	62.5
KXG33895	Sorghum	cytosol	59.4	59.95
Zm00001d042523_P001	Maize	cytosol	58.61	59.39
TraesCS7A01G398600.1	Wheat	cytosol	59.0	59.23
TraesCS7B01G299300.1	Wheat	cytosol, mitochondrion	56.11	59.14
TraesCS7D01G392900.2	Wheat	cytosol	58.87	59.1
HORVU7Hr1G093620.9	Barley	cytosol	56.24	56.84
VIT_07s0130g00490.t01	Wine grape	cytosol	14.06	18.54
VIT_07s0031g02330.t01	Wine grape	cytosol	13.93	18.37

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100256135	wikigene:100256135	MapMan:13.3.4.1.1.2.1	ProteinID:CBI28012	ProteinID:CBI28012.3
UniProt:D7TBH7	EMBL:FN595756	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100256135	wikigene:LOC100256135	PFAM:PF00515	PFAM:PF07719
PFAM:PF12895	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF13
SMART:SM00028	SMART:SM00671	SUPFAM:SSF48452	InterPro:Sel1-like	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_1	InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI00015C9028	ArrayExpress:VIT_11s0016g03260	EnsemblPlantsGene:VIT_11s0016g03260
EnsemblPlants:VIT_11s0016g03260.t01	RefSeq:XP_002283828	RefSeq:XP_002283828.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:2643801..2655466

Molecular Weight (calculated)

84182.0 Da

IEP (calculated)

7.049

GRAVY (calculated)

-0.287

Length

761 amino acids

Sequence
(BLAST)

001: MEAILVDSVL GSLRHFLHRN AIFICERLCA EFPSETNLQL LASCYLHNNQ AYAAYYILKG TQMAQSRYLF AISCFQMDLL TEAEAALCPV NEPGAEIPNG
101: AAGHYLLGLI YRYTDRKKSA VHHFKQALSL DPLLWAAYEE LCLLGAAEEA TAVFGEAAAL CIQKQHLHHG LASQNLQTSI EDRNLVSGRN LSSEDVSPRQ
201: LKHIHANNLR EIPGNYHGAA MSGATASQSL NSGPSSTAFY NTPSPMVAQL SGVAPPPLCR NVQQNGLNPS TVGNDSSPRS TVNPTIQAPR RKFVDEGKLR
301: KISGRLFSDS GPRRSTRLAG EAGANTNPSG TTVAGNGTIH SSKYLGGAKS SSAAFRSVTV RKGQTLANES FDEGTRQEVF DDSRSYISAA TSTSTSTSGD
401: PKSLEQDEAT MTIGGVITNT SKIINGAAEV LNLLRTLGEG YRLSCMYRCQ DALDVYMKLP HKHYNTGWVL SQIGKAYFEL VDYLGADRAF SSARQASPYS
501: LEGMDIYSTV LYHLREDMKL SYLAQELIST DRLAPQSWCA MGNCYSLQKD HETALKNFQR AVQLNSRFAY AHTLCGHEYV ALEYFENGIK SYQSALRIDD
601: RHYNSWYGLG MICLRQEKFE FAEHHFRMAF QINPRSSVIL CYLGTALHAL KRSGEALYMM EKAILADKKN PLPMYEKANI LLGLDNFDEA LEVLEELKEY
701: APRESSVYAL MGKIYKRRNM YDKAMLHFGI ALDLKPSAAD VATIKAAIEK LHVPDEIEDN L

Best Arabidopsis Sequence Match ( AT2G20000.1 )
(BLAST)

001: MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP

Arabidopsis Description

CDC27BCell division cycle protein 27 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.