Factsheet for VIT_01s0026g02730.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0181g00190.t01
VIT_00s0181g00210.t01
VIT_00s0332g00160.t01
VIT_02s0012g02000.t01
VIT_05s0020g01730.t01
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_08s0007g07790.t01
VIT_09s0002g05800.t01
VIT_11s0016g03260.t01
VIT_12s0028g00720.t01
VIT_12s0028g00740.t01
VIT_19s0014g01170.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04660.1	VIT_02s0012g02000.t01	AT1G06590.1	20706207
AT2G04660.1	VIT_12s0028g00720.t01	AT1G06590.1	20706207
AT2G04660.1	VIT_12s0028g00740.t01	AT1G06590.1	20706207
AT2G04660.1	VIT_19s0014g01170.t01	AT1G78770.1	20706207
AT2G04660.1	VIT_11s0016g03260.t01	AT2G20000.1	17944809
AT2G04660.1	VIT_11s0016g03260.t01	AT2G20000.1	20706207
AT2G04660.1	VIT_05s0020g01730.t01	AT2G39090.1	20706207
AT2G04660.1	VIT_08s0007g07790.t01	AT2G42260.1	20706207
AT2G04660.1	VIT_07s0031g02330.t01	AT3G48150.1	14508008
AT2G04660.1	VIT_07s0130g00490.t01	AT3G48150.1	14508008
AT2G04660.1	VIT_07s0031g02330.t01	AT3G48150.1	20706207
AT2G04660.1	VIT_07s0130g00490.t01	AT3G48150.1	20706207
AT2G04660.1	VIT_08s0007g07790.t01	AT3G57860.1	20706207
AT2G04660.1	VIT_00s0181g00190.t01	AT4G21530.1	20706207
AT2G04660.1	VIT_00s0181g00210.t01	AT4G21530.1	20706207
AT2G04660.1	VIT_09s0002g05800.t01	AT5G19990.1	20706207
AT2G04660.1	VIT_00s0332g00160.t01	ATMG00510.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32716	Soybean	golgi	25.37	78.32
HORVU2Hr1G083840.8	Barley	cytosol	45.19	76.29
KRG97883	Soybean	cytosol	76.33	76.16
KRH30995	Soybean	cytosol	75.76	75.68
PGSC0003DMT400047444	Potato	cytosol	74.75	74.66
Solyc05g007750.2.1	Tomato	cytosol	74.63	74.63
GSMUA_Achr3P19380_001	Banana	cytosol	72.59	73.26
AT2G04660.1	Thale cress	cytosol	71.69	73.18
CDY04835	Canola	cytosol	68.18	70.57
Bra028905.1-P	Field mustard	cytosol	68.06	70.21
Bra025616.1-P	Field mustard	cytosol	65.69	69.63
CDY30835	Canola	cytosol	65.8	69.33
Os04t0484800-01	Rice	cytosol	67.61	69.1
KXG20781	Sorghum	cytosol	67.04	68.92
CDY30292	Canola	cytosol	66.02	68.83
HORVU0Hr1G004870.2	Barley	cytosol	18.12	68.67
Zm00001d014685_P009	Maize	cytosol	66.59	68.37
HORVU0Hr1G004980.2	Barley	cytosol	26.39	67.93
TraesCS2A01G321000.1	Wheat	cytosol	66.14	67.91
TraesCS2D01G341700.1	Wheat	cytosol	66.14	67.91
TraesCS2B01G361700.1	Wheat	cytosol	66.02	67.79
HORVU0Hr1G004910.1	Barley	cytosol	6.46	45.97
KRH74904	Soybean	cytosol, extracellular, peroxisome	5.21	42.99

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:100263601	wikigene:100263601	MapMan:13.3.4.1.1.3.1
InterPro:APC_su2_C	ProteinID:CBI31933	ProteinID:CBI31933.3	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf
UniProt:D7TN60	EMBL:FN596002	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005680	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	InterPro:IPR016158
InterPro:IPR036388	EntrezGene:LOC100263601	wikigene:LOC100263601	PFAM:PF00888	PFAM:PF08672	PFscan:PS50069
PANTHER:PTHR11932	PANTHER:PTHR11932:SF5	SMART:SM00182	SMART:SM01013	SUPFAM:SSF46785	SUPFAM:SSF75632
UniParc:UPI0001BE3B2D	ArrayExpress:VIT_01s0026g02730	EnsemblPlantsGene:VIT_01s0026g02730	EnsemblPlants:VIT_01s0026g02730.t01	unigene:Vvi.21552	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_002271443	RefSeq:XP_002271443.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:12552197..12562139

Molecular Weight (calculated)

99879.6 Da

IEP (calculated)

4.615

GRAVY (calculated)

-0.335

Length

883 amino acids

Sequence
(BLAST)

001: MEAASSVSDL GILDSVDDAS ITEIMESWDG FCRATEALLN GHGDLSVGSE FVSHVHSLCK RSLGSLVQDH FLRSLEETFE RNGATRFWRH FDAYTHVEVM
101: EMSKSPIQEN GIQKVLYKAL DDVSLEKQYQ EKCLLMLVHA LQSYKDSISE ERHNSDAERI HLFSKYQLIV SSVLMTTLPR HFPEILHCYF KGRLEELSTI
201: MAGEYEDDNE SDDKDDMDLD EKNKVSYRGE MDIDECYQRR KFLENNKLVK NIGKVVRDLR NLGFTSMAED AYASAIFLLL KDKVHNLAGD DYRSSVLESI
301: KEWIQAVPLQ FLYALLAYLG DSVSYDNPSS GLKSPLASHP SSCYPGIDTP SEGLIRWQLR LEYFAYETLQ DLRIAKLFEI IVDYPDSSPA IEDLKQCLEY
401: TGQHSKLVDS FISALRYRLL TAGASTNDIL HQYVSTIKAL RTIDPAGVFL EAVGEPIRDY LRGRKDTIKC IVTMLTDGTG GNPNGPGNTG DSLLEELNRD
501: EENQENAGID DDFNIDEKQD WINAERWEPD PVEADPSKGS RNRRKVDILG MIVGIIGSKD QLVNEYRVML AEKLLNKSDY DIDSEIRTLE LLKIHFGESS
601: MQRCEIMLND LIDSKRTNSN IKATITQPSQ IGSELGETGV SLDILDATII SSNFWPPIQD EALNIPGPVD QLLADYAKRF HKIKTPRKLL WKKNLGTVKL
701: ELQFEGRVVQ FTVAPLHAAI IMQFQDQTSW TSKNLAASIG VPVDVLNRRI NFWISKGILS ESLVTDPNDH IFTLVDDMVE PGKNSVNAGS CEELLVCDEE
801: GERSVASVED QLHKEMIVYE KFIMGMLTNF GSMALDRIHN TLKMFCLADP PYDKSLQQLQ SFLSGLVSEE KLEIRDGMYF LKK

Best Arabidopsis Sequence Match ( AT2G04660.1 )
(BLAST)

001: MEALGSSDCN LEILETLSDD AIQEITESYD GFFTTVESLI AGTGDSLVED EFVSHVYCLC KYGLDSLVRD HFLRSLEQAF EKGGASSFWQ HFDAYSEKKH
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK

Arabidopsis Description

APC2APC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VYA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.