Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30835 | Canola | cytosol | 86.78 | 87.71 |
| AT2G04660.1 | Thale cress | cytosol | 85.36 | 83.58 |
| CDY04835 | Canola | cytosol | 83.12 | 82.53 |
| HORVU2Hr1G083840.8 | Barley | cytosol | 42.5 | 68.83 |
| KRH32716 | Soybean | golgi | 23.14 | 68.53 |
| VIT_01s0026g02730.t01 | Wine grape | cytosol | 68.83 | 66.02 |
| HORVU0Hr1G004870.2 | Barley | cytosol | 17.71 | 64.38 |
| KRG97883 | Soybean | cytosol | 67.06 | 64.18 |
| KRH30995 | Soybean | cytosol | 66.94 | 64.14 |
| PGSC0003DMT400047444 | Potato | cytosol | 65.41 | 62.67 |
| Solyc05g007750.2.1 | Tomato | cytosol | 64.94 | 62.29 |
| GSMUA_Achr3P19380_001 | Banana | cytosol | 63.64 | 61.6 |
| HORVU0Hr1G004980.2 | Barley | cytosol | 24.68 | 60.93 |
| KXG20781 | Sorghum | cytosol | 60.8 | 59.95 |
| Os04t0484800-01 | Rice | cytosol | 60.8 | 59.61 |
| Zm00001d014685_P009 | Maize | cytosol | 60.45 | 59.53 |
| TraesCS2A01G321000.1 | Wheat | cytosol | 59.98 | 59.07 |
| TraesCS2B01G361700.1 | Wheat | cytosol | 59.86 | 58.95 |
| TraesCS2D01G341700.1 | Wheat | cytosol | 59.74 | 58.84 |
| HORVU0Hr1G004910.1 | Barley | cytosol | 5.08 | 34.68 |
| KRH74904 | Soybean | cytosol, extracellular, peroxisome | 4.25 | 33.64 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.2620 | MapMan:13.3.4.1.1.3.1 | GO:A0A078GYG0 | UniProt:A0A078GYG0 | InterPro:APC_su2_C |
| EnsemblPlants:CDY30292 | ProteinID:CDY30292 | ProteinID:CDY30292.1 | ncoils:Coil | InterPro:Cullin_N | InterPro:Cullin_homology |
| InterPro:Cullin_homology_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0031625 | EnsemblPlantsGene:GSBRNA2T00044955001 |
| InterPro:IPR016158 | InterPro:IPR036388 | PFAM:PF00888 | PFAM:PF08672 | PFscan:PS50069 | PANTHER:PTHR11932 |
| PANTHER:PTHR11932:SF5 | SMART:SM00182 | SMART:SM01013 | SUPFAM:SSF46785 | SUPFAM:SSF75632 | UniPathway:UPA00143 |
| UniParc:UPI0004EDF05A | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
BnaC04g32030DBnaC04g32030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYG0]
Coordinates
chrLK032251:+:478670..482730
Molecular Weight (calculated)
95844.8 Da
IEP (calculated)
4.599
GRAVY (calculated)
-0.294
Length
847 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVLGSSEYN LETLSDDAIR EITESYDGFF TTVESLIAGA GDSSVEKEFV SHVSTLCKYG LDSLVRDHFL TSLEHAFEKT GGASSFWDHL DDYCLKNHTM
101: LFGQDYGEEI HQVLCKALEE ISREKQYHDK CTSMVVHALK SFKEERLNSD AERVELLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKEKLE ELSAIMDEDV
201: TQELESDGMD LDKSGEMDAD EGYSRHDELV KNIGKVVRDL RSIGFTSLAE NAYASAIFLL LKAKVHDLAG DEYRTSVLGP IKEWIQAVPL QFLNALLSYL
301: GDSISYGTTS SCLTSPLACC PSPSFSKVVT PSQGTVRWKL RLEYFAYQTL QDLRIANLFE IIVDYPESSP AIGDLKQCLE YTRQHSKLVE SFISSLKYRL
401: LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVAEPIRD YLRGRKDTIK CIITMLTDGS ARNANGSPGD SLLEELMRDG ETQENVGFDD DFHTDDKQAW
501: INASRWEPDP VEADPLKGSL SQRKVNILGL LVDIIGSKEQ LVNEYRVMLA EKLLNKTDYD IDTEIRTGEL LKIHFGEASM QRCEIMLNDL IDSKRVNTNI
601: KKASQTDIEL GESELSVDIL TSTILSTNFW PPIQDEPLEL PAPIDKLLSD YANRYYEIKT PRKLLWKKNL GSVKLELQFE DRSVQFTVSP THAAIIMQFQ
701: EKKRWTSIDL AATIGIPIDL LNGRVNFWIS KGVLRESNAN VFTLVESMAD SGKNESEELL ASDEESERSI AYVEDQLRKE TTIYKNFIMA MLTNGSMAVD
801: GIHNRLKMFY VADPAYDKSL QQLQSFLSRL VAEEKLELRD GMYLLKK
101: LFGQDYGEEI HQVLCKALEE ISREKQYHDK CTSMVVHALK SFKEERLNSD AERVELLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKEKLE ELSAIMDEDV
201: TQELESDGMD LDKSGEMDAD EGYSRHDELV KNIGKVVRDL RSIGFTSLAE NAYASAIFLL LKAKVHDLAG DEYRTSVLGP IKEWIQAVPL QFLNALLSYL
301: GDSISYGTTS SCLTSPLACC PSPSFSKVVT PSQGTVRWKL RLEYFAYQTL QDLRIANLFE IIVDYPESSP AIGDLKQCLE YTRQHSKLVE SFISSLKYRL
401: LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVAEPIRD YLRGRKDTIK CIITMLTDGS ARNANGSPGD SLLEELMRDG ETQENVGFDD DFHTDDKQAW
501: INASRWEPDP VEADPLKGSL SQRKVNILGL LVDIIGSKEQ LVNEYRVMLA EKLLNKTDYD IDTEIRTGEL LKIHFGEASM QRCEIMLNDL IDSKRVNTNI
601: KKASQTDIEL GESELSVDIL TSTILSTNFW PPIQDEPLEL PAPIDKLLSD YANRYYEIKT PRKLLWKKNL GSVKLELQFE DRSVQFTVSP THAAIIMQFQ
701: EKKRWTSIDL AATIGIPIDL LNGRVNFWIS KGVLRESNAN VFTLVESMAD SGKNESEELL ASDEESERSI AYVEDQLRKE TTIYKNFIMA MLTNGSMAVD
801: GIHNRLKMFY VADPAYDKSL QQLQSFLSRL VAEEKLELRD GMYLLKK
001: MEALGSSDCN LEILETLSDD AIQEITESYD GFFTTVESLI AGTGDSLVED EFVSHVYCLC KYGLDSLVRD HFLRSLEQAF EKGGASSFWQ HFDAYSEKKH
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK
Arabidopsis Description
APC2APC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VYA9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.