CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
extracellular 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032414.1-P	Field mustard	mitochondrion, plastid	98.56	97.69
CDY09966	Canola	mitochondrion, plastid	90.48	92.32
CDY10211	Canola	mitochondrion	90.14	88.48
CDY06653	Canola	mitochondrion	89.48	88.4
AT1G06590.1	Thale cress	mitochondrion	87.93	86.68
VIT_02s0012g02000.t01	Wine grape	cytosol	20.16	72.22
KRH73622	Soybean	endoplasmic reticulum, extracellular, plasma membrane	26.47	71.13
VIT_12s0028g00720.t01	Wine grape	extracellular	13.4	70.35
KRH14509	Soybean	extracellular, mitochondrion, plasma membrane, plastid	65.12	63.77
VIT_12s0028g00740.t01	Wine grape	nucleus	37.87	61.73
Solyc08g067190.2.1	Tomato	cytosol, plastid	59.14	55.22
HORVU5Hr1G005770.3	Barley	cytosol	49.28	51.33
Os12t0626300-01	Rice	cytosol, extracellular, plasma membrane	50.61	49.89
GSMUA_Achr9P29220_001	Banana	nucleus	51.16	49.78
TraesCS5A01G020800.1	Wheat	cytosol	50.72	49.67
TraesCS5B01G017800.1	Wheat	cytosol	50.72	49.67
TraesCS5D01G025900.1	Wheat	cytosol, nucleus, peroxisome	50.61	49.67
EES02737	Sorghum	cytosol, nucleus, plasma membrane	47.95	47.53
Zm00001d021235_P001	Maize	plastid	1.66	17.65

Protein Annotations

EnsemblPlants:CDY06219	EnsemblPlantsGene:GSBRNA2T00122130001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005680	InterPro:Apc5	InterPro:Apc5_dom	ncoils:Coil	PANTHER:PTHR12830	PANTHER:PTHR12830:SF9
PFAM:PF12862	ProteinID:CDY06219	ProteinID:CDY06219.1	SEG:seg	UniParc:UPI0004EDC543	UniPathway:UPA00143
MapMan:13.3.4.1.1.1.3	:	:	:	:	:

Description

BnaA09g49840D

Coordinates

chrLK031968:-:323484..329671

Molecular Weight (calculated)

99947.0 Da

IEP (calculated)

6.751

GRAVY (calculated)

-0.031

Length

903 amino acids

Sequence
(BLAST)

001: MAGLTRTAGA FAVTPHKISV CVLLQIYAPS AQMSLPFPFS SVSQHNRLGL YLLSLTKACD GMYEMKLEEL INQLREVGDD VDAWLTENLT NRFSYLSSPD
101: DLLNFFTDMR GILGSLDSGA VQDDQIVLDP NSILGMFVRR CILAFNLLSF EGVCHLFSSI EAYCREAHSS FAQYDASNSN LESLTQYDQM DKTTKLHKNA
201: SGSVPFHLHT PEALFKVTEG LLVTRTEKSS TRKFAEATSV ASASSSKVED TRVDESLFLR TNLQIQGFLM EKADAIETHG SSFSSSSIER FLEQLQNLAP
301: ELHRVHFLRY LNKLHSDDYF AALDNLLRYF DYSAGTEGFD LVPPSTGCSM HGRYEIGLLC LGMMHFRFGH PNLALEVLTE AVRVSQQLSN DTCLAYTLAA
401: MSNLLSEMGI ASTTSVLGAS YSSVTSTASS LSVQQRVYIL LKESLRRADT LKLKRLVASN HLAMAKFELM NVQRPLLSFG PKASMRHKTC PISVCKEIRL
501: GAHLISDFSS ESSKMTIDGS LSSVWLKDLQ KPWSQPVYSR ESSYRNNSTF FKFCDHLVSI PGSVSQIIGA SYLLRATSWE LYGSAPMARM NTLVYATLFG
601: DSSSSSDAEL AYLKLIQHLA LHKGYKDAFA ALTIAEEKFL TVSKSKIMLL KLQLVHEHAL HRGNLKLAQR MCNELGGLAS TTMGVDMELK VEASLREART
701: LLAAKQYSQA ANTAHSLFCT CHKLNLQIEK ASVLLLLAEI HKKSGNAVMG LPYALASISF CQSFNLDLLK ASATLTLAEL WRGLGSNHSK RALNLLHGAF
801: PMILGHGGLE LRARAYIFEA NCYLSDPSFS VSTDSDTVLD SLRQASDELQ ALEYHELTAE ALYLMAMVYD KLGRPEEREE AAALFMKHIT ALNNPQDVEP
901: NMA

Best Arabidopsis Sequence Match ( AT1G06590.1 )
(BLAST)

001: MAGLTRTAGA FAVTPHKISV CILLQIYAPS AQMSLPFPFS SVAQHNRLGL YLLSLTKSCD DIFEPKLEKL INQLREVGEE MDAWLTDHLT NRFSSLASPD
101: DLLNFFNDMR GILGSLDSGV VQDDQIILDP NSNLGMFVRR CILAFNLLSF EGVCHLFSSI EDYCKEAHSS FAQFGAPNNN LESLIQYDQM DMENYAMDKP
201: TEEIEFQKTA SGIVPFHLHT PDSLMKATEG LLHNRKETSR TSKKDTEATP VARASTSTLE ESLVDESLFL RTNLQIQGFL MEQADAIEIH GSSSSFSSSS
301: IESFLDQLQK LAPELHRVHF LRYLNKLHSD DYFAALDNLL RYFDYSAGTE GFDLVPPSTG CSMYGRYEIG LLCLGMMHFR FGHPNLALEV LTEAVRVSQQ
401: LSNDTCLAYT LAAMSNLLSE MGIASTSGVL GSSYSPVTST ASSLSVQQRV YILLKESLRR ADSLKLRRLV ASNHLAMAKF ELMHVQRPLL SFGPKASMRH
501: KTCPVSVCKE IRLGAHLISD FSSESSTMTI DGSLSSAWLK DLQKPWGPPV ISPDSGSRKS STFFQLCDHL VSIPGSVSQL IGASYLLRAT SWELYGSAPM
601: ARMNTLVYAT LFGDSSSSSD AELAYLKLIQ HLALYKGYKD AFAALKVAEE KFLTVSKSKV LLLKLQLLHE RALHCGNLKL AQRICNELGG LASTAMGVDM
701: ELKVEASLRE ARTLLAAKQY SQAANVAHSL FCTCHKFNLQ IEKASVLLLL AEIHKKSGNA VLGLPYALAS ISFCQSFNLD LLKASATLTL AELWLGLGSN
801: HTKRALDLLH GAFPMILGHG GLELRARAYI FEANCYLSDP SSSVSTDSDT VLDSLRQASD ELQALEYHEL AAEASYLMAM VYDKLGRLDE REEAASLFKK
901: HIIALENPQD VEQNMA

Arabidopsis Description

APC5Anaphase-promoting complex subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1U4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.