CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04835
CDY20922
CDY25160
CDY29224
CDY30292
CDY30835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16320.1	CDY04835	AT2G04660.1	17944809
AT3G16320.1	CDY30292	AT2G04660.1	17944809
AT3G16320.1	CDY30835	AT2G04660.1	17944809
AT3G16320.1	CDY20922	AT2G18290.1	17944809
AT3G16320.1	CDY25160	AT2G18290.1	17944809
AT3G16320.1	CDY29224	AT2G18290.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30158	Canola	cytosol	95.65	95.52
Bra027173.1-P	Field mustard	cytosol	89.34	81.15
AT3G16320.1	Thale cress	cytosol	80.08	78.43
Os06t0622500-00	Rice	cytosol	29.73	55.79
CDY40468	Canola	cytosol	48.25	46.24
CDY35917	Canola	cytosol	48.11	46.16
GSMUA_Achr1P19740_001	Banana	cytosol	48.53	46.01
TraesCS7B01G299300.1	Wheat	cytosol, mitochondrion	45.58	45.01
Zm00001d042523_P001	Maize	cytosol	46.98	44.61
KXG33895	Sorghum	cytosol	46.98	44.43
TraesCS7A01G398600.1	Wheat	cytosol	46.84	44.06
TraesCS7D01G392900.2	Wheat	cytosol	46.56	43.8
HORVU7Hr1G093620.9	Barley	cytosol	43.9	41.57
CDY35918	Canola	cytosol	14.31	41.13
CDY58069	Canola	nucleus	10.24	16.37
CDY44976	Canola	cytosol	10.52	14.85
CDY58070	Canola	cytosol	10.1	14.55
CDY36901	Canola	cytosol	9.96	14.17
CDY70805	Canola	nucleus	4.35	10.3

Protein Annotations

Gene3D:1.25.40.10	MapMan:13.3.4.1.1.2.1	EnsemblPlants:CDX97740	ProteinID:CDX97740	ProteinID:CDX97740.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00104996001	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
PFAM:PF00515	PFAM:PF12895	PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558
PANTHER:PTHR12558:SF13	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1
InterPro:TPR_repeat	UniParc:UPI0004EE0490	SEG:seg	:	:	:

Description

BnaA05g23390D

Coordinates

chrLK031900:+:1276130..1280444

Molecular Weight (calculated)

80216.4 Da

IEP (calculated)

6.404

GRAVY (calculated)

-0.394

Length

713 amino acids

Sequence
(BLAST)

001: METLLANCVE KNLTQFMFSN AIFLCERLLA QFPSEVNLQL LARCYLSNSQ PYSAYYILKG SKTPESRYLF AFSCFKLDLL GEAESALLST EQVPGGAAGH
101: YLLGLIYRSA GRKNSSIQQF RMALSCDPLC WEAYAELCSL GAAGEASVVF GNVAAQRLQK TNVSQRINFS GGETMDHLID SDKVSKDTCV WQTEHVSGEN
201: QQDLKVKQLG VEIPPDSDKQ CNGSSHTNGW DLKTPSPVLT QVLDAPPPML YKNMRRPEVD GLMPVYGESR RKFMSEEESL EAPEESGRRR SARIAARRKI
301: PLFHSYGKDS HVLHHSPSES NGVPSLSSMI GKCRIQSSKE ATTSGQSIGD TGSSVDDEQN SNPRGSSPNP FSLMSGISEV LNLLKILGDG HRHLLMYNCQ
401: EALLVYQKLS EKQYNTHWVL MQVGKAYVEL QNYFNADSVF TLAHQKSPYA LEGMDTYSTV LYHLKEEMRL GYLAQELIAV DRLSPESWCA SGNYYSLRKD
501: HEAALKMFRR AIQLNDRFTY AHTLCGHELA ALEDFEEAER CYRKALSIDT RHYNAWYGLG MTYLHQEKFE FAQHQFQMAL QINPRSSVIM CYFGIALHES
601: KRNDEALKMM EKAIVADARN PLSKYFKANI LADLGDYHRA LEVLEELKDS APHESSVHAL LGKIYKQVKL YDKAVLNFGT ALDLNPSPSD TVKIKACMER
701: LTVPNELETE EDL

Best Arabidopsis Sequence Match ( AT3G16320.2 )
(BLAST)

001: MMENLLANCV QKNLNHFMFT NAIFLCELLL AQFPSEVNLQ LLARCYLSNS QAYSAYYILK GSKTPQSRYL FAFSCFKLDL LGEAEAALLP CEDYAEEVPG
101: GAAGHYLLGL IYRYSGRKNC SIQQFRMALS FDPLCWEAYG ELCSLGAAEE ASTVFGNVAS QRLQKTCVEQ RISFSEGATI DQITDSDKAL KDTGLSQTEH
201: IPGENQQDLK IMQQPGDIPP NTDRQLSTNG WDLNTPSPVL LQVMDALPPL LLKNMRRPAV EGSLMSVHGV RVRRRNFFSE ELSAEAQEES GRRRSARIAA
301: RKKNPMSQSF GKDSHWLHLS PSESNYAPSL SSMIGKCRIQ SSKEATTSGQ SVSDIGSSVD DEEKSNPSES SPDRFSLISG ISEVLSLLKI LGDGHRHLHM
401: YKCQEALLAY QKLSQKQYNT HWVLMQVGKA YFELQDYFNA DSSFTLAHQK YPYALEGMDT YSTVLYHLKE EMRLGYLAQE LISVDRLSPE SWCAVGNCYS
501: LRKDHDTALK MFQRAIQLNE RFTYAHTLCG HEFAALEEFE DAERCYRKAL GIDTRHYNAW YGLGMTYLRQ EKFEFAQHQF QLALQINPRS SVIMCYYGIA
601: LHESKRNDEA LMMMEKAVLT DAKNPLPKYY KAHILTSLGD YHKAQKVLEE LKECAPQESS VHASLGKIYN QLKQYDKAVL HFGIALDLSP SPSDAVKIKA
701: YMERLILPDE LVTEENL

Arabidopsis Description

CDC27aTetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT3G16320]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.