Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra024475.1-P | |
| Bra025616.1-P | |
| Bra028905.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16320.1 | Bra025616.1-P | AT2G04660.1 | 17944809 |
| AT3G16320.1 | Bra028905.1-P | AT2G04660.1 | 17944809 |
| AT3G16320.1 | Bra024475.1-P | AT2G18290.1 | 17944809 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97740 | Canola | cytosol | 81.15 | 89.34 |
| CDY30158 | Canola | cytosol | 80.0 | 87.96 |
| AT3G16320.1 | Thale cress | cytosol | 67.77 | 73.08 |
| Os06t0622500-00 | Rice | cytosol | 26.88 | 55.53 |
| Bra039034.1-P | Field mustard | cytosol | 43.18 | 45.63 |
| KXG33895 | Sorghum | cytosol | 43.31 | 45.09 |
| TraesCS7B01G299300.1 | Wheat | cytosol, mitochondrion | 41.4 | 45.01 |
| GSMUA_Achr1P19740_001 | Banana | cytosol | 43.06 | 44.95 |
| Zm00001d042523_P001 | Maize | cytosol | 42.68 | 44.61 |
| TraesCS7A01G398600.1 | Wheat | cytosol | 42.8 | 44.33 |
| TraesCS7D01G392900.2 | Wheat | cytosol | 42.8 | 44.33 |
| HORVU7Hr1G093620.9 | Barley | cytosol | 40.25 | 41.97 |
| Bra033769.1-P | Field mustard | nucleus | 13.38 | 18.17 |
| Bra018081.1-P | Field mustard | cytosol | 13.12 | 17.79 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:13.3.4.1.1.2.1 | EnsemblPlantsGene:Bra027173 | EnsemblPlants:Bra027173.1 | EnsemblPlants:Bra027173.1-P | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | UniProt:M4EEG1 |
| PFAM:PF12895 | PFAM:PF13181 | PFAM:PF13432 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR12558 |
| PANTHER:PTHR12558:SF13 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat |
| UniParc:UPI0002547833 | SEG:seg | : | : | : | : |
Description
AT3G16320 (E=5e-313) CDC27a | CDC27a; binding
Coordinates
chrA05:-:19528895..19533355
Molecular Weight (calculated)
88688.5 Da
IEP (calculated)
6.964
GRAVY (calculated)
-0.410
Length
785 amino acids
Sequence
(BLAST)
(BLAST)
001: MLIFGFVQNP ERQRFIRLRD LARSPREKAR LLKFPLAARD LLLRDNLTHT HPSFCSPNAT APSLLVQFRR QNMETLLANC VEKNLTQFMF SNAIFLCERL
101: LAQFPSEVNL QLLARCYLSN SQPYSAYYIL KGSKTPESRY LFAFSCFKLD LLGEAESALL STEQVPGGAA GHYLLGLIYR YAGRKNSSIQ QFRMALSCDP
201: LCWEAYAELC SLGAAGDASV VFGNVAAQRL QKTNVSQRIN FSEGESRDQL IDSDKASKDT SVWQTEHVSG ENQQDLKVKQ LGAEILPDSD KQCNGSSHTN
301: GWDLKTPSPV LTQVLDAPPP MLYKNMRRPE VEGLMYVHGE SRRKFVSEEE SSEAPEESGR RRSARIAARR KIPLFHSYGK DSHVLHHSPS ESNGVPSLSS
401: MIGKCRIQSS KEAMTSGQSI GDTGSSVDDE QNSNPRGSSP NPFSLMSGIS EVLNLLKILG DGHRHLLMYN CQEALLVYQK LSEKQYNTHW VLMQVGKAYV
501: ELQDYFNADS VFTLAHQKSP YALEGMDTYS TVLYHLKEEM RLGYLAQELI AVDRLSPESW CASGNYYSLR KDHEAALKMF RRAIQLNDRF TYAHTLCGHE
601: LAALEDFEEA EKCYRKALSI DTRHYNAWYG LGMTYLHQEK FEFAQHQFQV ALQINPRSSV IMCYFGIALH ESKRNDEALK MMEKAIVADA RNPLSKYFKA
701: NILADLGDYH RALEVLEELK DSAPHESSVH ALLGKIYKQV KLYDKAVLNF GSALDLNPSP SDTVKIKACM ERLTVPNELE TEEDL
101: LAQFPSEVNL QLLARCYLSN SQPYSAYYIL KGSKTPESRY LFAFSCFKLD LLGEAESALL STEQVPGGAA GHYLLGLIYR YAGRKNSSIQ QFRMALSCDP
201: LCWEAYAELC SLGAAGDASV VFGNVAAQRL QKTNVSQRIN FSEGESRDQL IDSDKASKDT SVWQTEHVSG ENQQDLKVKQ LGAEILPDSD KQCNGSSHTN
301: GWDLKTPSPV LTQVLDAPPP MLYKNMRRPE VEGLMYVHGE SRRKFVSEEE SSEAPEESGR RRSARIAARR KIPLFHSYGK DSHVLHHSPS ESNGVPSLSS
401: MIGKCRIQSS KEAMTSGQSI GDTGSSVDDE QNSNPRGSSP NPFSLMSGIS EVLNLLKILG DGHRHLLMYN CQEALLVYQK LSEKQYNTHW VLMQVGKAYV
501: ELQDYFNADS VFTLAHQKSP YALEGMDTYS TVLYHLKEEM RLGYLAQELI AVDRLSPESW CASGNYYSLR KDHEAALKMF RRAIQLNDRF TYAHTLCGHE
601: LAALEDFEEA EKCYRKALSI DTRHYNAWYG LGMTYLHQEK FEFAQHQFQV ALQINPRSSV IMCYFGIALH ESKRNDEALK MMEKAIVADA RNPLSKYFKA
701: NILADLGDYH RALEVLEELK DSAPHESSVH ALLGKIYKQV KLYDKAVLNF GSALDLNPSP SDTVKIKACM ERLTVPNELE TEEDL
001: MMENLLANCV QKNLNHFMFT NAIFLCELLL AQFPSEVNLQ LLARCYLSNS QAYSAYYILK GSKTPQSRYL FAFSCFKLDL LGEAEAALLP CEDYAEEVPG
101: GAAGHYLLGL IYRYSGRKNC SIQQFRMALS FDPLCWEAYG ELCSLGAAEE ASTVFGNVAS QRLQKTCVEQ RISFSEGATI DQITDSDKAL KDTGLSQTEH
201: IPGENQQDLK IMQQPGDIPP NTDRQLSTNG WDLNTPSPVL LQVMDALPPL LLKNMRRPAV EGSLMSVHGV RVRRRNFFSE ELSAEAQEES GRRRSARIAA
301: RKKNPMSQSF GKDSHWLHLS PSESNYAPSL SSMIGKCRIQ SSKEATTSGQ SVSDIGSSVD DEEKSNPSES SPDRFSLISG ISEVLSLLKI LGDGHRHLHM
401: YKCQEALLAY QKLSQKQYNT HWVLMQVGKA YFELQDYFNA DSSFTLAHQK YPYALEGMDT YSTVLYHLKE EMRLGYLAQE LISVDRLSPE SWCAVGNCYS
501: LRKDHDTALK MFQRAIQLNE RFTYAHTLCG HEFAALEEFE DAERCYRKAL GIDTRHYNAW YGLGMTYLRQ EKFEFAQHQF QLALQINPRS SVIMCYYGIA
601: LHESKRNDEA LMMMEKAVLT DAKNPLPKYY KAHILTSLGD YHKAQKVLEE LKECAPQESS VHASLGKIYN QLKQYDKAVL HFGIALDLSP SPSDAVKIKA
701: YMERLILPDE LVTEENL
101: GAAGHYLLGL IYRYSGRKNC SIQQFRMALS FDPLCWEAYG ELCSLGAAEE ASTVFGNVAS QRLQKTCVEQ RISFSEGATI DQITDSDKAL KDTGLSQTEH
201: IPGENQQDLK IMQQPGDIPP NTDRQLSTNG WDLNTPSPVL LQVMDALPPL LLKNMRRPAV EGSLMSVHGV RVRRRNFFSE ELSAEAQEES GRRRSARIAA
301: RKKNPMSQSF GKDSHWLHLS PSESNYAPSL SSMIGKCRIQ SSKEATTSGQ SVSDIGSSVD DEEKSNPSES SPDRFSLISG ISEVLSLLKI LGDGHRHLHM
401: YKCQEALLAY QKLSQKQYNT HWVLMQVGKA YFELQDYFNA DSSFTLAHQK YPYALEGMDT YSTVLYHLKE EMRLGYLAQE LISVDRLSPE SWCAVGNCYS
501: LRKDHDTALK MFQRAIQLNE RFTYAHTLCG HEFAALEEFE DAERCYRKAL GIDTRHYNAW YGLGMTYLRQ EKFEFAQHQF QLALQINPRS SVIMCYYGIA
601: LHESKRNDEA LMMMEKAVLT DAKNPLPKYY KAHILTSLGD YHKAQKVLEE LKECAPQESS VHASLGKIYN QLKQYDKAVL HFGIALDLSP SPSDAVKIKA
701: YMERLILPDE LVTEENL
Arabidopsis Description
CDC27aTetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT3G16320]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.