Factsheet for Bra025616.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002279.1-P
Bra004677.1-P
Bra005063.1-P
Bra006529.1-P
Bra006530.1-P
Bra007362.1-P
Bra013534.1-P
Bra015512.1-P
Bra018081.1-P
Bra020079.1-P
Bra027173.1-P
Bra032414.1-P
Bra033769.1-P
Bra035062.1-P
Bra039034.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04660.1	Bra015512.1-P	AT1G06590.1	20706207
AT2G04660.1	Bra032414.1-P	AT1G06590.1	20706207
AT2G04660.1	Bra035062.1-P	AT1G78770.1	20706207
AT2G04660.1	Bra039034.1-P	AT2G20000.1	17944809
AT2G04660.1	Bra039034.1-P	AT2G20000.1	20706207
AT2G04660.1	Bra005063.1-P	AT2G39090.1	20706207
AT2G04660.1	Bra004677.1-P	AT2G42260.1	20706207
AT2G04660.1	Bra027173.1-P	AT3G16320.1	20706207
AT2G04660.1	Bra018081.1-P	AT3G48150.1	14508008
AT2G04660.1	Bra033769.1-P	AT3G48150.1	14508008
AT2G04660.1	Bra018081.1-P	AT3G48150.1	20706207
AT2G04660.1	Bra033769.1-P	AT3G48150.1	20706207
AT2G04660.1	Bra007362.1-P	AT3G57860.1	20706207
AT2G04660.1	Bra013534.1-P	AT4G21530.1	20706207
AT2G04660.1	Bra002279.1-P	AT5G19990.1	20706207
AT2G04660.1	Bra006529.1-P	AT5G19990.1	20706207
AT2G04660.1	Bra006530.1-P	AT5G19990.1	20706207
AT2G04660.1	Bra020079.1-P	AT5G19990.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30835	Canola	cytosol	99.88	99.28
AT2G04660.1	Thale cress	cytosol	83.91	80.81
Bra028905.1-P	Field mustard	cytosol	82.83	80.61
HORVU2Hr1G083840.8	Barley	cytosol	43.22	68.83
KRH32716	Soybean	golgi	23.29	67.83
VIT_01s0026g02730.t01	Wine grape	cytosol	69.63	65.69
HORVU0Hr1G004870.2	Barley	cytosol	17.89	63.95
KRG97883	Soybean	cytosol	66.15	62.26
KRH30995	Soybean	cytosol	65.91	62.1
GSMUA_Achr3P19380_001	Banana	cytosol	65.19	62.06
PGSC0003DMT400047444	Potato	cytosol	64.83	61.09
Solyc05g007750.2.1	Tomato	cytosol	64.59	60.93
HORVU0Hr1G004980.2	Barley	cytosol	24.97	60.64
KXG20781	Sorghum	cytosol	61.34	59.49
TraesCS2A01G321000.1	Wheat	cytosol	61.34	59.42
Os04t0484800-01	Rice	cytosol	61.58	59.38
TraesCS2B01G361700.1	Wheat	cytosol	61.22	59.3
TraesCS2D01G341700.1	Wheat	cytosol	61.1	59.19
Zm00001d014685_P009	Maize	cytosol	60.5	58.6
HORVU0Hr1G004910.1	Barley	cytosol	5.4	36.29
KRH74904	Soybean	cytosol, extracellular, peroxisome	4.08	31.78

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	MapMan:13.3.4.1.1.3.1	InterPro:APC_su2_C	EnsemblPlantsGene:Bra025616	EnsemblPlants:Bra025616.1
EnsemblPlants:Bra025616.1-P	ncoils:Coil	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388	UniProt:M4EA09
PFAM:PF00888	PFAM:PF08672	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF5	SMART:SM00182
SMART:SM01013	SUPFAM:SSF46785	SUPFAM:SSF75632	UniParc:UPI0002544B59	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT2G04660 (E=1e-300) APC2 | APC2; ubiquitin protein ligase binding / ubiquitin-protein ligase

Coordinates

chrA04:+:7471638..7475504

Molecular Weight (calculated)

94410.1 Da

IEP (calculated)

4.520

GRAVY (calculated)

-0.288

Length

833 amino acids

Sequence
(BLAST)

001: MQLFEYNLET LSDDAIREIT ESYDGFFTTV ESLIAGAGDF AVEKEFVSHV STLCNYGLDS LVCDHFLRSL EQAFDKSGAS SFGHHFDDYS DKNHTDCGEE
101: VHQLLSKALE EISTEKQYNE KCISMVVHAL QSFKEKRLSS DAERAQIFSR FQSMLSSTLM TTLPQHFPEI LHCYFKEKLE ELSTIMDEDD AQQLESDGMD
201: LDVDEGYSRH DEFVKNIGKV VCDLRSLGFT SMAENAYASA IFLLLKSKVH DLAGDDYRTS VLGPIKEWIQ TVPLQFLSAL LCYIGDSISY DTTACGLTSP
301: LDCCPSPSFS KVVTPSQGIG RWKLLLEYFA YETLQDLRIA KLFEIIVDYP ESSPAIEDLK QCLEYTRQHS KLVESFISSL KYRLLTAGAS TNDIFHQYVL
401: TIKAFRAIDP SGVFLEPVAE PIRDYLRGRK DTIKCIVTML TDGSGGNRNG SGNPGDSLLE ELMRDEENQE NVGFDDDFHT DDKQAWINAS RWEPDPLEAG
501: PSKGSLSERK VDILGMLVDI IGSSEQLVNE YRVMLAEKLL NKIDYDIETE IRTVELLKIH FGEASMQRCE IMLNDLIDSK RVNTNIKKTS QTGAEVVESE
601: LSVDILTSKI LSTNFWPPIQ DEPLELPAPI DKLLSDYANR YHEIKTPRKL LWKKNLGTVK LELQFEDRAM QFTVSPTHAA IIMQFQEKKI WTSIDLAAAI
701: GIPIDLLNRR VNFWISQGVL RESNANVFTL VESMTNSGKN ESEEILASDE ESERSIAYVE DQLRKETTIY KNFIMAMLTN GSMAVDGIHN RLKMFYVADP
801: AYDKSLQQLQ SFLSRLVAEE KLELRDGMYL LKK

Best Arabidopsis Sequence Match ( AT2G04660.1 )
(BLAST)

001: MEALGSSDCN LEILETLSDD AIQEITESYD GFFTTVESLI AGTGDSLVED EFVSHVYCLC KYGLDSLVRD HFLRSLEQAF EKGGASSFWQ HFDAYSEKKH
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK

Arabidopsis Description

APC2APC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VYA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.