Factsheet for Bra002279.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006526.1-P
Bra020076.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19990.1	Bra006526.1-P	AT5G19960.1	21798944
AT5G19990.1	Bra020076.1-P	AT5G19960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35832	Canola	cytosol	99.52	99.52
AT5G19990.1	Thale cress	cytosol	98.09	98.09
Bra006529.1-P	Field mustard	cytosol	97.14	97.14
AT5G20000.1	Thale cress	cytosol	96.18	96.18
KRH44668	Soybean	cytosol, mitochondrion, nucleus	92.84	93.06
GSMUA_Achr7P09950_001	Banana	cytosol	89.5	93.05
KRH46990	Soybean	nucleus	92.12	92.34
Solyc05g018590.2.1	Tomato	nucleus	91.89	92.33
VIT_09s0002g05800.t01	Wine grape	cytosol	91.65	92.09
TraesCS6D01G166700.1	Wheat	cytosol, golgi	91.65	91.87
TraesCS6B01G207100.1	Wheat	cytosol	91.65	91.87
TraesCS6A01G177600.1	Wheat	cytosol	91.65	91.87
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	91.41	91.85
Zm00001d053616_P002	Maize	cytosol	92.36	91.71
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	92.12	91.47
Os02t0205300-01	Rice	cytosol	92.36	91.27
TraesCS7B01G254400.1	Wheat	cytosol	91.41	90.54
TraesCS7D01G350300.1	Wheat	cytosol	91.41	90.54
HORVU7Hr1G084550.2	Barley	cytosol	91.41	90.54
TraesCS7A01G372600.1	Wheat	cytosol	91.41	90.54
Os06t0600100-01	Rice	plasma membrane	86.87	86.05
EER88603	Sorghum	cytosol	84.25	84.25
HORVU6Hr1G036990.7	Barley	cytosol	91.65	83.12
PGSC0003DMT400038718	Potato	cytosol	81.15	78.52
Bra005023.1-P	Field mustard	cytosol	33.41	58.58
Bra020079.1-P	Field mustard	cytosol	97.85	56.87
Bra030922.1-P	Field mustard	cytosol	45.11	44.37
Bra039688.1-P	Field mustard	cytosol	44.87	44.13
Bra040569.1-P	Field mustard	cytosol	45.11	43.65
Bra035338.1-P	Field mustard	cytosol	41.53	43.61
Bra033655.1-P	Field mustard	cytosol	41.53	43.61
Bra039431.1-P	Field mustard	cytosol	40.33	39.86
Bra040214.1-P	Field mustard	cytosol	40.33	39.86
Bra001152.1-P	Field mustard	cytosol	40.33	39.86
Bra020378.1-P	Field mustard	cytosol	38.19	39.6
Bra002662.1-P	Field mustard	cytosol	38.19	39.6
Bra011079.1-P	Field mustard	cytosol	40.57	38.37
Bra010342.1-P	Field mustard	cytosol	40.57	38.2
Bra006775.1-P	Field mustard	cytosol	35.56	38.11
Bra024165.1-P	Field mustard	cytosol	26.49	34.37
Bra008198.1-P	Field mustard	cytosol	39.14	26.11
Bra017378.1-P	Field mustard	cytosol	26.25	18.24
Bra001297.1-P	Field mustard	cytosol	29.36	15.2
Bra034089.1-P	Field mustard	cytosol	29.36	15.19
Bra029795.1-P	Field mustard	cytosol	29.12	15.08
Bra003123.1-P	Field mustard	cytosol	28.88	14.94
Bra022833.1-P	Field mustard	cytosol	26.01	14.67
Bra006978.1-P	Field mustard	cytosol	28.16	14.55
Bra000999.1-P	Field mustard	cytosol, mitochondrion	26.49	13.33
Bra007262.1-P	Field mustard	plastid	29.12	12.45
Bra005733.1-P	Field mustard	cytosol	28.4	10.78
Bra009342.1-P	Field mustard	cytosol	26.97	10.08
Bra032565.1-P	Field mustard	mitochondrion	27.21	6.12
Os06t0600301-00	Rice	plasma membrane	1.67	3.1
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.6	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra002279	EnsemblPlants:Bra002279.1	EnsemblPlants:Bra002279.1-P	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	UniProt:M4CDJ8	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF57	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242
UniParc:UPI0002544DE8	SEG:seg	:	:	:	:

Description

AT5G19990 (E=2e-228) RPT6A, ATSUG1 | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A); ATPase

Coordinates

chrA10:-:10539398..10541926

Molecular Weight (calculated)

47184.7 Da

IEP (calculated)

9.368

GRAVY (calculated)

-0.370

Length

419 amino acids

Sequence
(BLAST)

001: MAAVGVEARR PETAMEETCN AKGAVAKQGE GLKQYYLQHI HELQRLLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDINKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEDSRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDVEMAV
401: AKVMKKDTEK NMSLRKLWK

Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)

001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Arabidopsis Description

RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.