Factsheet for Solyc05g018590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	99.28	99.28
GSMUA_Achr7P09950_001	Banana	cytosol	90.17	93.3
VIT_09s0002g05800.t01	Wine grape	cytosol	93.05	93.05
KRH44668	Soybean	cytosol, mitochondrion, nucleus	92.81	92.58
AT5G19990.1	Thale cress	cytosol	92.81	92.36
CDY35832	Canola	cytosol	92.81	92.36
KRH46990	Soybean	nucleus	92.57	92.34
Bra002279.1-P	Field mustard	cytosol	92.33	91.89
CDX70903	Canola	cytosol	91.37	91.59
Zm00001d053616_P002	Maize	cytosol	92.09	91.0
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	92.09	91.0
AT5G20000.1	Thale cress	cytosol	91.37	90.93
Bra006529.1-P	Field mustard	cytosol	91.37	90.93
TraesCS6D01G166700.1	Wheat	cytosol, golgi	91.13	90.91
TraesCS6B01G207100.1	Wheat	cytosol	91.13	90.91
TraesCS6A01G177600.1	Wheat	cytosol	91.13	90.91
Os02t0205300-01	Rice	cytosol	92.09	90.57
HORVU7Hr1G084550.2	Barley	cytosol	91.85	90.54
TraesCS7D01G350300.1	Wheat	cytosol	91.85	90.54
TraesCS7B01G254400.1	Wheat	cytosol	91.85	90.54
TraesCS7A01G372600.1	Wheat	cytosol	91.85	90.54
PGSC0003DMT400038718	Potato	cytosol	89.21	85.91
Os06t0600100-01	Rice	plasma membrane	87.05	85.82
EER88603	Sorghum	cytosol	84.41	84.01
HORVU6Hr1G036990.7	Barley	cytosol	91.13	82.25
CDX88865	Canola	cytosol, extracellular	87.77	58.19
CDY42324	Canola	cytosol, extracellular	92.09	53.56
CDY44958	Canola	cytosol, plasma membrane	92.33	53.4
Bra020079.1-P	Field mustard	cytosol	92.09	53.26
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	22.54	49.47
Solyc03g123730.2.1	Tomato	nucleus	46.04	44.86
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	46.04	44.76
Solyc01g109940.2.1	Tomato	nucleus	42.21	44.22
Solyc10g054040.1.1	Tomato	cytosol, unclear	41.49	43.36
Solyc01g099760.2.1	Tomato	nucleus, plastid	40.53	39.95
Solyc06g082630.2.1	Tomato	cytosol, plastid	39.33	39.61
Solyc06g082660.2.1	Tomato	cytosol, nucleus	39.09	39.37
Solyc06g083620.2.1	Tomato	nucleus, plastid	40.77	38.29
Solyc05g012190.2.1	Tomato	cytosol	27.82	18.99
Solyc06g074980.2.1	Tomato	nucleus	29.98	15.53
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	29.74	15.4
Solyc09g008070.2.1	Tomato	cytosol, unclear	29.74	15.35
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	29.5	15.22
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	29.26	14.68
Solyc01g068330.2.1	Tomato	nucleus	27.34	13.89
Solyc10g078320.1.1	Tomato	nucleus	28.78	12.16
Solyc06g008730.2.1	Tomato	cytosol	26.14	11.73
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	27.58	10.2
Os06t0600301-00	Rice	plasma membrane	1.68	3.1
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.6	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595
GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	UniProt:K4BZB3	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF57	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc05g018590.2	EnsemblPlants:Solyc05g018590.2.1	TIGRFAMs:TIGR01242	UniParc:UPI00027673F9	:	:

Description

No Description!

Coordinates

chr5:-:22328150..22340843

Molecular Weight (calculated)

47148.7 Da

IEP (calculated)

9.357

GRAVY (calculated)

-0.407

Length

417 amino acids

Sequence
(BLAST)

001: MASVDVEKRR SDMEREEACS AKPTKQGEGL RQYYMQHIHD LQLQVRVKTH NLNRLEAQRN ELNSKVRMLK EELQLLQEPG SYVGEVVKVM GKSKVLVKVH
101: PEGKYVVDIG KNIDITKITP STRVALRNDS YVLHLILPSK VDPLVNLMKV EKVPDSTYDM IGGLDQQIKE IKEVIELPIK HPELFESLGI AQPKGVLLYG
201: PPGTGKTLLA RAVAHHTDCT FIRVSGSELV QKYIGEGSRM VRELFVMARE HAPSIIFMDE IDSIGSARME SGSGNGDSEV QRTMLELLNQ LDGFEASNKI
301: KVLMATNRID ILDQALLRPG RIDRKIEFPN PNEESRQDIL KIHSRKMNLM RGIDLKKIAE KMSGASGAEL KAVCTEAGMF ALRERRVHVT QEDFEMAVAK
401: VMKKETEKNM SLRKLWK

Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)

001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Arabidopsis Description

RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.