Factsheet for Solyc08g021990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099760.2.1	Tomato	nucleus, plastid	91.58	41.13
GSMUA_Achr3P04570_001	Banana	cytosol	83.16	37.35
Solyc05g018590.2.1	Tomato	nucleus	49.47	22.54
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	49.47	22.54
Solyc06g083620.2.1	Tomato	nucleus, plastid	51.05	21.85
Solyc10g054040.1.1	Tomato	cytosol, unclear	44.21	21.05
Solyc01g109940.2.1	Tomato	nucleus	43.68	20.85
Solyc03g123730.2.1	Tomato	nucleus	46.84	20.79
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	46.84	20.75
Solyc06g082630.2.1	Tomato	cytosol, plastid	43.16	19.81
Solyc06g082660.2.1	Tomato	cytosol, nucleus	43.16	19.81
Solyc05g012190.2.1	Tomato	cytosol	36.84	11.46
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	33.16	7.58
Solyc06g074980.2.1	Tomato	nucleus	32.11	7.58
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	31.58	7.43
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	31.05	7.33
Solyc09g008070.2.1	Tomato	cytosol, unclear	31.05	7.3
Solyc01g068330.2.1	Tomato	nucleus	30.0	6.94
Solyc10g078320.1.1	Tomato	nucleus	33.68	6.48
Solyc06g008730.2.1	Tomato	cytosol	30.0	6.14
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	31.58	5.32

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030433	GO:GO:0031595
GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	UniProt:K4CJL9	InterPro:P-loop_NTPase
PFAM:PF00004	InterPro:PSMC3	PANTHER:PTHR23073	PANTHER:PTHR23073:SF7	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc08g021990.1
EnsemblPlants:Solyc08g021990.1.1	UniParc:UPI000276BA88	:	:	:	:

Description

No Description!

Coordinates

chr8:+:33998365..34000325

Molecular Weight (calculated)

21582.7 Da

IEP (calculated)

6.037

GRAVY (calculated)

-0.462

Length

190 amino acids

Sequence
(BLAST)

001: MFIGDGAKLV RDAFQLAKEK SPCSIFIDEI DAIGTKRFDN RHFMLFDPSE VSGDRVVQRT MLELLNQLDG FSSDDRIKVN AATNRADILD PALMRSGRLD
101: RKIEFPHPTE EARARILQIH SRKMNVHPDV NFEELARSTD DFNGDQLKAL CVEAGMLALR RDATEVTHED FNEGIIQVQA KKKASLKYYA

Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Arabidopsis Description

RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.