Factsheet for Solyc01g099760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g005080.2.1
Solyc04g025710.1.1
Solyc05g006520.2.1
Solyc05g009530.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05530.1	Solyc04g005080.2.1	AT1G59900.1	24846764
AT3G05530.1	Solyc04g025710.1.1	AT1G59900.1	24846764
AT3G05530.1	Solyc05g006520.2.1	AT1G59900.1	24846764
AT3G05530.1	Solyc05g009530.2.1	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063574	Potato	cytosol	100.0	100.0
VIT_14s0060g02260.t01	Wine grape	cytosol	92.2	96.3
GSMUA_Achr9P13230_001	Banana	cytosol	92.2	96.3
GSMUA_Achr5P04520_001	Banana	cytosol	91.49	95.56
KRG92899	Soybean	cytosol, nucleus	95.51	95.51
VIT_05s0020g01180.t01	Wine grape	cytosol	95.27	95.27
KRH33891	Soybean	endoplasmic reticulum, nucleus	95.27	95.27
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	86.29	95.05
CDY40714	Canola	cytosol	95.04	94.81
CDX74142	Canola	cytosol	95.04	94.81
Bra001152.1-P	Field mustard	cytosol	95.04	94.81
CDY27761	Canola	cytosol	94.8	94.58
CDY05176	Canola	cytosol	94.8	94.58
AT3G05530.1	Thale cress	cytosol	94.8	94.58
Bra039431.1-P	Field mustard	cytosol	94.8	94.58
CDY18801	Canola	cytosol	94.56	94.34
CDY18782	Canola	cytosol	94.56	94.34
Bra040214.1-P	Field mustard	cytosol	94.56	94.34
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	94.09	92.56
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	93.85	92.54
EER87942	Sorghum	cytosol	93.85	92.33
KXG31298	Sorghum	cytosol	93.14	92.06
Zm00001d045163_P001	Maize	mitochondrion	38.3	92.05
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	41.13	91.58
Os02t0803700-01	Rice	cytosol, nucleus, plastid	92.67	91.38
KRH68501	Soybean	nucleus	90.07	89.65
TraesCS3B01G457100.1	Wheat	cytosol, golgi	91.73	89.4
TraesCS3A01G421900.1	Wheat	cytosol	91.73	89.4
TraesCS3D01G417000.1	Wheat	cytosol	91.49	89.17
TraesCS7B01G036400.1	Wheat	cytosol	89.6	88.76
TraesCS7D01G134800.1	Wheat	cytosol	89.36	88.11
Zm00001d018409_P007	Maize	cytosol	90.78	85.71
KRG96790	Soybean	mitochondrion	66.19	84.34
Solyc05g018590.2.1	Tomato	nucleus	39.95	40.53
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	39.95	40.53
Solyc06g083620.2.1	Tomato	nucleus, plastid	41.13	39.19
Solyc03g123730.2.1	Tomato	nucleus	39.48	39.02
Solyc01g109940.2.1	Tomato	nucleus	36.64	38.94
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	39.48	38.93
Solyc10g054040.1.1	Tomato	cytosol, unclear	35.93	38.1
Solyc06g082630.2.1	Tomato	cytosol, plastid	36.88	37.68
Solyc06g082660.2.1	Tomato	cytosol, nucleus	36.88	37.68
Solyc05g012190.2.1	Tomato	cytosol	28.61	19.8
Solyc06g074980.2.1	Tomato	nucleus	29.31	15.4
Solyc09g008070.2.1	Tomato	cytosol, unclear	29.08	15.22
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	29.79	15.16
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	28.84	15.16
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	28.84	15.1
Solyc01g068330.2.1	Tomato	nucleus	25.06	12.91
Solyc10g078320.1.1	Tomato	nucleus	28.84	12.36
Solyc06g008730.2.1	Tomato	cytosol	24.82	11.3
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	23.64	8.87

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.5	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058
GO:GO:0009553	GO:GO:0009555	GO:GO:0009987	GO:GO:0010498	GO:GO:0016043	GO:GO:0016787
GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597
GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	UniProt:K4B110	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	InterPro:PSMC3	PANTHER:PTHR23073	PANTHER:PTHR23073:SF7	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc01g099760.2	EnsemblPlants:Solyc01g099760.2.1	TIGRFAMs:TIGR01242	UniParc:UPI0002768F6A	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:89907447..89912465

Molecular Weight (calculated)

47484.8 Da

IEP (calculated)

4.645

GRAVY (calculated)

-0.433

Length

423 amino acids

Sequence
(BLAST)

001: MATPMAEDSN FEDDQLHAMS TEDIIRASRL LDNEIRIIKE ELQRTNLELD SFKEKIKENQ EKIKLNKQLP YLVGNIVEIL EMNPEEEAEE DGANIDLDSQ
101: RKGKCVVLKT STRQTIFLPV VGLVDPDNLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THQERFQKLG
201: VRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL VQMFIGDGAK LVRDAFQLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ
301: LDGFSSDDRI KVIAATNRAD ILDPALMRSG RLDRKIEFPH PTEEARARIL QIHSRKMNVN PDVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVT
401: HEDFNEGIIQ VQAKKKASLN YYA

Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Arabidopsis Description

RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.