Factsheet for Solyc10g078320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56690.1	Solyc01g008950.2.1	AT3G56800.1	11346951
AT3G56690.1	Solyc10g077010.1.1	AT3G56800.1	11346951
AT3G56690.1	Solyc10g081170.1.1	AT3G56800.1	11346951
AT3G56690.1	Solyc11g072240.1.1	AT3G56800.1	11346951
AT3G56690.1	Solyc12g099990.1.1	AT3G56800.1	11346951

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018483	Potato	cytosol	40.02	96.34
VIT_08s0040g00910.t01	Wine grape	cytosol	62.21	57.98
GSMUA_Achr6P29120_001	Banana	cytosol	35.16	57.83
CDX72118	Canola	plastid	53.8	56.25
KRH66707	Soybean	plastid	57.95	54.68
AT3G56690.1	Thale cress	cytosol, plastid	55.93	54.01
CDY56774	Canola	plastid	54.81	53.14
KRG95054	Soybean	plastid	41.34	52.92
Bra007262.1-P	Field mustard	plastid	52.48	52.86
EES09632	Sorghum	cytosol, plastid	45.59	45.55
Zm00001d049140_P006	Maize	cytosol, plastid	45.9	45.07
TraesCS4B01G108300.1	Wheat	plastid	45.29	44.7
TraesCS4A01G204700.1	Wheat	cytosol, plastid	45.29	44.43
HORVU1Hr1G015310.16	Barley	cytosol, plastid	45.09	44.28
TraesCS1B01G089700.1	Wheat	cytosol, plastid	43.97	44.24
TraesCS4D01G105500.2	Wheat	cytosol, plastid	44.88	44.04
HORVU4Hr1G016200.10	Barley	cytosol, plastid	44.78	43.94
TraesCS1A01G071300.1	Wheat	cytosol, plastid	44.58	43.78
TraesCS1D01G073600.1	Wheat	cytosol, plastid	44.58	43.78
Solyc05g012190.2.1	Tomato	cytosol	22.29	36.01
Solyc06g074980.2.1	Tomato	nucleus	27.66	33.91
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	6.48	33.68
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	27.36	33.54
Solyc09g008070.2.1	Tomato	cytosol, unclear	27.46	33.54
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	27.05	33.04
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	27.25	32.37
Solyc01g109940.2.1	Tomato	nucleus	12.66	31.41
Solyc03g123730.2.1	Tomato	nucleus	13.48	31.07
Solyc10g054040.1.1	Tomato	cytosol, unclear	12.46	30.83
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	13.37	30.77
Solyc01g068330.2.1	Tomato	nucleus	25.03	30.09
Solyc06g083620.2.1	Tomato	nucleus, plastid	13.07	29.05
Solyc01g099760.2.1	Tomato	nucleus, plastid	12.36	28.84
Solyc05g018590.2.1	Tomato	nucleus	12.16	28.78
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	12.16	28.78
Solyc06g082660.2.1	Tomato	cytosol, nucleus	11.85	28.26
Solyc06g082630.2.1	Tomato	cytosol, plastid	11.85	28.26
Solyc06g008730.2.1	Tomato	cytosol	21.58	22.93
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	20.26	17.73

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	UniProt:K4D274	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF27	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc10g078320.1	EnsemblPlants:Solyc10g078320.1.1	UniParc:UPI000276A23D	SEG:seg	:	:

Description

Calmodulin-interacting protein 111 [Source:Projected from Arabidopsis thaliana (AT3G56690) UniProtKB/Swiss-Prot;Acc:Q9LET7]

Coordinates

chr10:-:60143745..60151486

Molecular Weight (calculated)

107490.0 Da

IEP (calculated)

5.761

GRAVY (calculated)

-0.220

Length

987 amino acids

Sequence
(BLAST)

001: MPSKKKNQKS ASRLSQSELS NTSSDVEFTE GELKCCLEEA SRKFPSLISE TDFIGRISED AVETVDTKGC KIWLSESSML ASSISPGSIV SVSLASLKKY
101: ESNFPLSSLA DECARHFGLD CTENVDHEAG NFFALASVFP SCKVLKNGAR LSSSLSWSMG YPASGRIVFV HPIRDHTIRS IARGSNQSSN GKVSSLLVSN
201: SEELSLLLVS RNGVPPLNSF VSSQYSITET RNGRGETMAG SSTRTPLHSR SRLNSPSTRE FNTPKDQESV SISSDAGDTT TEIFNIREVL VNDQSKKLIQ
301: TCTASWLCSR ILLSGNLVIV PLLSRLCFFQ VTGASPPQSF GDYGNVAFSV DHKTKVFLHL PQDTEVGTPI TSLSPSDLEL RNMNNKDGVD YAKLGGLSEE
401: FAVLMDIIIS SAVKGTMASM GLRPTKGVLL HGPPGTGKTA LARLCAHKAG VNLFSVNGPE VISQYYGESE RALNEVFDSA SQAAPAVVFI DELDAIAPAR
501: KDAGEELSQR MVATLLNLMD GIRRADGVLV IAATNRPDSV EPALRRPGRL DREIEIGVPS ARQRFEILET LLGEMEHALL DKDVHDLATA THGFVGADLA
601: ALCNEAALNC LREHVESKTC FGNTQYKPSM PSYDACLGRN GTHCLQDNED LSSNGDFEGA SSSISEACIS SDIPRNFSRV AQTDTLRITF KDFERARMKI
701: RPSAMREVIL EVPKVNWDDV GGQREVKMQL IEAVEWPQKH QEAFNRIGTR PPTGVLMFGP PGCSKTLLAR AVASEAGLNF LAVKGPELYS KWVGESEKAV
801: RTLFAKARAN SPSIIFFDEI DGLAVVRGKE SDGISVSDRV MSQLLIELDG LHQRVNVTVI AATNRPDKID PALLRPGRFD RLLYVGPPDE KDREAIFHIH
901: LKKMPCSSDI CVEELARLTS GCTGADISLI CREAAIAAIE ESLDASEITM EHLKAAIRQV PPSEVHSYQE LSNRFQRLVH SDPVKDD

Best Arabidopsis Sequence Match ( AT3G56690.1 )
(BLAST)

0001: MPSKKKQSRT PSRLSNSEPP ASPRTPASST TSRDTDSINE EELRRSIEEA SAAFPCLLGK SAIIARVADV ASESIRGSKI WLSETSMVAA SLSPGSTVSV
0101: SLASPESRFS RSFPLSSIKA EYGDDSESII ADEPGNYFVL TTVFSSSKVF KDAVRISLNL CYGLGCPVSG RTVFVYPVSG PSLSDQFNGN GRSRYDDVNH
0201: LSLLACKELC LELTPFRNML QAKNAFESSY EQNGNGNSTP KTPANLQKFS SPRPKSPVSP IIEDSVFSCK QRFSSESSID LREVLSNESS KKLLQICASS
0301: WLYPCSLLYG NFVSVPILSE ICIFCVKRAD KRPSDTSNRN HAFMINQETK VYLHHTLDLA SEIQGRTFVQ GLQFDEGENV GCEISKLGGL SKEYAILRDI
0401: IDSSSIKNSL SSLGLRPTKG VLIHGPPGTG KTSLARTFAR HSGVNFFSVN GPEIISQYLG ESEKALDEVF RSASNATPAV VFIDDLDAIA PARKEGGEEL
0501: SQRMVATLLN LMDGISRTDG VVVIAATNRP DSIEPALRRP GRLDREIEIG VPSSTQRSDI LHIILRGMRH SLSNIQVEQL AMATHGFVGA DLSALCCEAA
0601: FVCLRRHLDQ SSSSSNLPLE EAPIAESSSN MSDISSDSSD SASSCITISA TTSGAQRSFS LDETVSLVAD DIQNNGNSCS EQMLRKQGEH TLSVGFEDFE
0701: NAKTKIRPSA MREVILEVPK VNWEDVGGQN EVKNQLMEAV EWPQKHQDAF KRIGTRPPSG ILMFGPPGCS KTLMARAVAS EAKLNFLAVK GPELFSKWVG
0801: ESEKAVRSLF AKARANAPSI IFFDEIDSLA SIRGKENDGV SVSDRVMSQL LVELDGLHQR VGVTVIAATN RPDKIDSALL RPGRFDRLLY VGPPNETDRE
0901: AILKIHLRKI PCSSDICLKE LASITKGYTG ADISLICREA AIAALEESLE MEEISMRHLK AAISQIEPTE ILSYKALSEK FQRLVHTDPQ REEEVTQPGN
1001: KSRSLWTPLR SVAMFLRRHI AS

Arabidopsis Description

CIP111Calmodulin-interacting protein 111 [Source:UniProtKB/Swiss-Prot;Acc:Q9LET7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.