Factsheet for Solyc03g123730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023656	Potato	cytosol	99.77	99.77
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	98.83	98.6
PGSC0003DMT400012446	Potato	cytosol	98.83	98.6
EES01223	Sorghum	cytosol	97.66	98.12
EES07646	Sorghum	cytosol	97.43	97.89
Zm00001d018309_P003	Maize	cytosol	97.43	97.89
VIT_09s0002g00170.t01	Wine grape	cytosol	97.43	97.89
Os06t0192600-01	Rice	cytosol, nucleus, plasma membrane, plastid	97.43	97.89
GSMUA_AchrUn_...	Banana	cytosol	97.2	97.88
KRH69005	Soybean	nucleus	97.2	97.65
GSMUA_Achr8P16830_001	Banana	cytosol	96.5	97.18
TraesCS7D01G157200.1	Wheat	cytosol	96.5	96.95
TraesCS7B01G060900.1	Wheat	golgi	96.5	96.95
TraesCS7A01G156800.1	Wheat	cytosol	96.5	96.95
TraesCSU01G080700.1	Wheat	cytosol	95.33	95.77
TraesCS6D01G326400.1	Wheat	cytosol	95.33	95.77
TraesCS6B01G376500.1	Wheat	golgi	95.33	95.77
HORVU6Hr1G083150.1	Barley	cytosol	95.33	95.77
HORVU7Hr1G032070.1	Barley	cytosol	96.03	92.57
Zm00001d052078_P003	Maize	cytosol	97.43	91.25
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	20.79	46.84
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	45.09	46.28
Solyc05g018590.2.1	Tomato	nucleus	44.86	46.04
Solyc01g109940.2.1	Tomato	nucleus	38.78	41.71
Solyc10g054040.1.1	Tomato	cytosol, unclear	38.32	41.1
Solyc01g099760.2.1	Tomato	nucleus, plastid	39.02	39.48
Solyc06g082630.2.1	Tomato	cytosol, plastid	36.68	37.92
Solyc06g082660.2.1	Tomato	cytosol, nucleus	36.68	37.92
Solyc06g083620.2.1	Tomato	nucleus, plastid	38.55	37.16
Solyc05g012190.2.1	Tomato	cytosol	26.4	18.49
Solyc06g074980.2.1	Tomato	nucleus	32.48	17.27
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	32.24	17.14
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	32.24	17.08
Solyc09g008070.2.1	Tomato	cytosol, unclear	32.24	17.08
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	32.48	16.73
Solyc01g068330.2.1	Tomato	nucleus	28.27	14.74
Solyc10g078320.1.1	Tomato	nucleus	31.07	13.48
Solyc06g008730.2.1	Tomato	cytosol	28.27	13.02
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	24.53	9.31

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.1	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597
GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	UniProt:K4BN72	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF60	SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc03g123730.2
EnsemblPlants:Solyc03g123730.2.1	TIGRFAMs:TIGR01242	UniParc:UPI0002765C09	:	:	:

Description

No Description!

Coordinates

chr3:+:70469482..70475104

Molecular Weight (calculated)

47877.1 Da

IEP (calculated)

6.065

GRAVY (calculated)

-0.387

Length

428 amino acids

Sequence
(BLAST)

001: MAPAADVEDE IKDEKNPRPL DEDDIALLKT YGLGPYSTSI KKCEKEIKEM AKKINDLCGI KESDTGLAVP SQWDLVSDKQ MMQEEQPLQV ARCTKIISPN
101: TEDAKYVINV KQIAKFVVGL GDKVSPTDIE EGMRVGVDRN KYQIQIPLPP KIDPSVTMMT VEEKPDVTYN DVGGCKEQIE KMREVVELPM LHPEKFVKLG
201: IDPPKGVLCY GPPGTGKTLL ARAVANRTDA CFIRVIGSEL VQKYVGEGAR MVRELFQMAR SKKACIVFFD EVDAIGGARF DDGVGGDNEV QRTMLEIVNQ
301: LDGFDARGNI KVLMATNRPD TLDPALLRPG RLDRKVEFGL PDLESRTQIF KIHTRTMNCE RDIRFELLAR LCPNSTGADI RSVCTEAGMY AIRARRKTVT
401: EKDFLDAVNK VIKGYQKFSA TPKYMVYN

Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)

001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Arabidopsis Description

RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.