Factsheet for VIT_09s0002g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69005	Soybean	nucleus	97.89	97.89
GSMUA_AchrUn_...	Banana	cytosol	97.65	97.88
Solyc03g123730.2.1	Tomato	nucleus	97.89	97.43
PGSC0003DMT400023656	Potato	cytosol	97.89	97.43
EES01223	Sorghum	cytosol	97.42	97.42
PGSC0003DMT400012446	Potato	cytosol	97.89	97.2
Zm00001d018309_P003	Maize	cytosol	97.18	97.18
Os06t0192600-01	Rice	cytosol, nucleus, plasma membrane, plastid	97.18	97.18
EES07646	Sorghum	cytosol	97.18	97.18
GSMUA_Achr8P16830_001	Banana	cytosol	96.95	97.18
TraesCS7A01G156800.1	Wheat	cytosol	96.48	96.48
TraesCS7B01G060900.1	Wheat	golgi	96.48	96.48
TraesCS7D01G157200.1	Wheat	cytosol	96.48	96.48
HORVU6Hr1G083150.1	Barley	cytosol	95.54	95.54
TraesCS6B01G376500.1	Wheat	golgi	95.54	95.54
TraesCS6D01G326400.1	Wheat	cytosol	95.54	95.54
TraesCSU01G080700.1	Wheat	cytosol	95.54	95.54
HORVU7Hr1G032070.1	Barley	cytosol	96.01	92.12
Zm00001d052078_P003	Maize	cytosol	97.18	90.59
VIT_11s0016g00230.t01	Wine grape	cytosol	80.28	80.47
VIT_09s0002g05800.t01	Wine grape	cytosol	45.07	46.04
VIT_04s0008g04690.t01	Wine grape	cytosol	44.6	45.24
VIT_03s0038g04350.t01	Wine grape	cytosol	39.2	41.85
VIT_18s0001g13090.t01	Wine grape	cytosol	38.97	41.71
VIT_14s0060g02260.t01	Wine grape	cytosol	38.03	40.0
VIT_05s0020g01180.t01	Wine grape	cytosol	38.97	39.24
VIT_06s0004g08220.t01	Wine grape	cytosol	36.85	37.56
VIT_07s0005g05160.t01	Wine grape	cytosol	38.73	37.08
VIT_06s0061g00340.t01	Wine grape	cytosol	32.86	18.3
VIT_17s0000g08890.t01	Wine grape	cytosol	33.8	17.69
VIT_08s0040g01480.t01	Wine grape	cytosol	33.1	17.49
VIT_01s0010g02600.t01	Wine grape	cytosol	27.93	14.42
VIT_07s0104g01610.t01	Wine grape	cytosol	27.0	12.26
VIT_08s0040g00910.t01	Wine grape	cytosol	29.58	11.9
VIT_00s0125g00170.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	23.94	8.99

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100233125	wikigene:100233125	MapMan:19.2.6.2.1.1	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	ProteinID:AAU04833	ProteinID:AAU04833.1	EMBL:AM429802	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	EMBL:AY684129	ProteinID:CAN80220	ProteinID:CAN80220.1	ProteinID:CBI35785	ProteinID:CBI35785.3
UniProt:D7TZI9	EMBL:FN596494	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597
GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	EntrezGene:LOC100233125	wikigene:LOC100233125	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF60	SMART:SM00382	SUPFAM:SSF52540
TIGR:TC60568	TIGR:TC68282	TIGRFAMs:TIGR01242	UniParc:UPI00015C8F77	ArrayExpress:VIT_09s0002g00170	EnsemblPlantsGene:VIT_09s0002g00170
EnsemblPlants:VIT_09s0002g00170.t01	unigene:Vvi.7468	RefSeq:XP_002263826	RefSeq:XP_002263826.1	:	:

Description

No Description!

Coordinates

chr9:-:157719..171509

Molecular Weight (calculated)

47684.8 Da

IEP (calculated)

6.068

GRAVY (calculated)

-0.427

Length

426 amino acids

Sequence
(BLAST)

001: MAPEPEDEIK DEKNPRPLDE DDIALLKTYG LGPYSAPIKK TEKEIKEMAK KVNDLCGIKE SDTGLAAPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNSE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDSVNKVI KGYQKFSATP KYMVYN

Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)

001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Arabidopsis Description

RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.