Factsheet for VIT_08s0040g01480.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0061g00340.t01
VIT_08s0040g01480.t01
VIT_18s0164g00070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	VIT_18s0164g00070.t01	AT1G71830.1	15592873
AT3G09840.1	VIT_18s0164g00070.t01	AT1G71830.1	16473966
AT3G09840.1	VIT_18s0164g00070.t01	AT1G71830.1	16621602
AT3G09840.1	VIT_18s0164g00070.t01	AT1G71830.1	17693538
AT3G09840.1	VIT_06s0061g00340.t01	AT3G09840.1	15592873
AT3G09840.1	VIT_08s0040g01480.t01	AT3G09840.1	15592873
AT3G09840.1	VIT_06s0061g00340.t01	AT3G09840.1	16621602
AT3G09840.1	VIT_08s0040g01480.t01	AT3G09840.1	16621602
AT3G09840.1	VIT_06s0061g00340.t01	AT3G09840.1	17693538
AT3G09840.1	VIT_08s0040g01480.t01	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027096	Potato	cytosol	95.41	95.17
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	95.16	94.93
Solyc06g074980.2.1	Tomato	nucleus	94.04	94.16
PGSC0003DMT400055513	Potato	cytosol	94.17	94.05
PGSC0003DMT400031321	Potato	cytosol	93.8	93.91
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	94.04	93.7
GSMUA_Achr4P26800_001	Banana	cytosol	93.67	93.33
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	93.18	93.29
PGSC0003DMT400050662	Potato	cytosol	93.05	93.17
CDY11249	Canola	cytosol	92.06	92.98
AT5G03340.1	Thale cress	cytosol	93.3	92.84
Solyc09g008070.2.1	Tomato	cytosol, unclear	92.93	92.7
Bra001297.1-P	Field mustard	cytosol	92.93	92.58
CDX73996	Canola	cytosol	92.93	92.58
CDY22207	Canola	cytosol	92.93	92.47
CDY41316	Canola	cytosol, extracellular	92.93	92.47
CDY54618	Canola	cytosol	92.68	92.45
Bra034089.1-P	Field mustard	cytosol	92.8	92.35
CDY41581	Canola	cytosol	92.56	92.33
CDY07941	Canola	cytosol	92.56	92.21
Bra029795.1-P	Field mustard	cytosol	92.56	92.21
CDY13308	Canola	cytosol	92.56	92.1
AT3G09840.1	Thale cress	cytosol	92.31	91.97
Zm00001d027707_P001	Maize	cytosol, plasma membrane	92.06	91.95
Zm00001d048409_P001	Maize	cytosol	91.69	91.92
AT3G53230.1	Thale cress	cytosol	92.8	91.78
Bra003123.1-P	Field mustard	cytosol	92.18	91.73
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	91.94	91.59
CDX80862	Canola	cytosol, plastid	91.94	91.59
Zm00001d014124_P001	Maize	cytosol, plasma membrane	91.44	90.88
Zm00001d032859_P006	Maize	plasma membrane	91.32	90.86
Bra006978.1-P	Field mustard	cytosol	90.94	90.38
GSMUA_Achr9P23550_001	Banana	mitochondrion	89.83	89.83
VIT_17s0000g08890.t01	Wine grape	cytosol	90.32	89.43
VIT_06s0061g00340.t01	Wine grape	cytosol	83.62	88.1
TraesCSU01G001000.1	Wheat	cytosol	86.85	87.17
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	20.97	86.67
TraesCS3B01G154400.1	Wheat	cytosol	83.0	84.9
HORVU0Hr1G006340.1	Barley	cytosol	82.63	84.52
TraesCS3A01G144500.1	Wheat	cytosol	55.83	84.43
TraesCS1B01G419200.1	Wheat	cytosol	82.63	84.41
TraesCS3A01G145100.1	Wheat	cytosol	82.51	84.28
TraesCS3B01G171200.1	Wheat	cytosol	82.26	84.14
TraesCS3B01G171400.1	Wheat	cytosol	75.56	83.77
TraesCS3B01G172000.1	Wheat	cytosol	81.27	83.55
TraesCS1B01G259200.1	Wheat	cytosol	81.76	83.52
TraesCS3A01G145000.1	Wheat	cytosol	72.08	83.48
EER95525	Sorghum	cytosol	80.77	83.46
TraesCS3B01G172100.1	Wheat	cytosol	81.76	83.42
KXG40206	Sorghum	cytosol	80.77	83.25
CDX67563	Canola	cytosol	90.07	82.59
HORVU3Hr1G029450.1	Barley	cytosol	82.63	82.43
HORVU3Hr1G029440.1	Barley	cytosol	82.63	81.82
TraesCS3B01G171300.1	Wheat	cytosol	73.2	80.93
TraesCS5B01G323100.1	Wheat	cytosol	57.82	80.21
TraesCS1A01G248500.1	Wheat	cytosol	59.18	79.9
Zm00001d032117_P001	Maize	cytosol	27.42	69.06
Bra005733.1-P	Field mustard	cytosol	93.18	68.03
VIT_18s0001g13090.t01	Wine grape	cytosol	17.12	34.67
VIT_03s0038g04350.t01	Wine grape	cytosol	17.0	34.34
VIT_09s0002g00170.t01	Wine grape	cytosol	17.49	33.1
VIT_11s0016g00230.t01	Wine grape	cytosol	17.0	32.24
VIT_01s0010g02600.t01	Wine grape	cytosol	31.89	31.15
VIT_05s0020g01180.t01	Wine grape	cytosol	15.88	30.26
VIT_06s0004g08220.t01	Wine grape	cytosol	15.63	30.14
VIT_14s0060g02260.t01	Wine grape	cytosol	15.14	30.12
VIT_04s0008g04690.t01	Wine grape	cytosol	15.14	29.05
VIT_09s0002g05800.t01	Wine grape	cytosol	15.01	29.02
VIT_07s0005g05160.t01	Wine grape	cytosol	15.88	28.76
VIT_08s0040g00910.t01	Wine grape	cytosol	33.87	25.78
VIT_07s0104g01610.t01	Wine grape	cytosol	27.67	23.77
VIT_00s0125g00170.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	26.3	18.69

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100265402	wikigene:100265402	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf
ProteinID:CBI32765	ProteinID:CBI32765.3	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	UniProt:D7TQP5
EMBL:FN596008	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EntrezGene:LOC100265402	wikigene:LOC100265402	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359
PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072
SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGR:TC57691	TIGR:TC64836
TIGRFAMs:TIGR01243	UniParc:UPI00015CADAF	ArrayExpress:VIT_08s0040g01480	EnsemblPlantsGene:VIT_08s0040g01480	EnsemblPlants:VIT_08s0040g01480.t01	unigene:Vvi.7531
RefSeq:XP_002282146	RefSeq:XP_002282146.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:12644715..12650894

Molecular Weight (calculated)

89593.6 Da

IEP (calculated)

4.891

GRAVY (calculated)

-0.393

Length

806 amino acids

Sequence
(BLAST)

001: MSNQAESSDS KGTKRDFSTA ILERKKAANR LVVDEAVNDD NSVVALHPDT MEKLQLFRGD TILIKGKKRK DTICIALADD TCDEPKIRMN KVVRSNLRVR
101: LGDVVSVHQC PDVKYGKRVH ILPVDDTIEG VTGNLFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSVEFKV IETDPAEYCV VAPDTEIFCE GEPVRREDED
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVIGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEVG RLEVLRIHTK NMKLSEDVDL
401: ERIAKDTHGY VGADLAALCT EAALQCIREK MDVIDLEDES IDAEILNSMA VTDEHFKTAL GTSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISVKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GSSVGDAGGA
601: ADRVLNQLLT EMDGMSAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEDSRHQI FKACLRKSPV SKDVDLRALA KYTQGFSGAD ITEICQRACK
701: YAIRENIEKD IERERRRREN PEAMEEDVDE EVAEIKAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGTEFRFSE TSTGAAGSDP FAASAGGAAD
801: EDDLYS

Best Arabidopsis Sequence Match ( AT3G53230.1 )
(BLAST)

001: MANQAESSDS KGTKKDFSTA ILEKKKAANR LVVDEAINDD NSVVSLHPDT MEKLQLFRGD TILIKGKKRK DTVCIALADE TCDEPKIRMN KVVRSNLRVR
101: LGDVISVHQC PDVKYGNRVH ILPLDDTIEG VSGNIFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPDTEIFCE GEPIKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEIG RLEVLRIHTK NMKLAEDVDL
401: ERVSKDTHGY VGADLAALCT EAALQCIREK MDVIDLDDEE IDAEILNSMA VSNDHFQTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GNSVGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEESRYQI FKSCLRKSPV AKDVDLRALA KYTQGFSGAD ITEICQRSCK
701: YAIRENIEKD IEKERKRAES PEAMEEDEEE IAEIKAGHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFPDA PTGTTGAFPG AAATVGGVDP
801: FATSGGAADD DDLYS

Arabidopsis Description

CDC48DCell division control protein 48 homolog D [Source:UniProtKB/Swiss-Prot;Acc:Q9SCN8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.