Factsheet for TraesCS1B01G419200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G248500.1
TraesCS1B01G259200.1
TraesCS1B01G419200.1
TraesCS2A01G343100.1
TraesCS2B01G340700.1
TraesCS2D01G321400.1
TraesCS3A01G144500.1
TraesCS3A01G145000.1
TraesCS3A01G145100.1
TraesCS3B01G154400.1
TraesCS3B01G171200.1
TraesCS3B01G171300.1
TraesCS3B01G171400.1
TraesCS3B01G172000.1
TraesCS3B01G172100.1
TraesCS5B01G323100.1
TraesCS6A01G203600.2
TraesCS6B01G223700.3
TraesCS6D01G186900.2
TraesCS7A01G293300.3
TraesCS7B01G182300.1
TraesCS7D01G291200.3
TraesCSU01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	TraesCS2A01G343100.1	AT1G71830.1	15592873
AT3G09840.1	TraesCS2B01G340700.1	AT1G71830.1	15592873
AT3G09840.1	TraesCS2D01G321400.1	AT1G71830.1	15592873
AT3G09840.1	TraesCS6A01G203600.2	AT1G71830.1	15592873
AT3G09840.1	TraesCS6B01G223700.3	AT1G71830.1	15592873
AT3G09840.1	TraesCS6D01G186900.2	AT1G71830.1	15592873
AT3G09840.1	TraesCS7A01G293300.3	AT1G71830.1	15592873
AT3G09840.1	TraesCS7B01G182300.1	AT1G71830.1	15592873
AT3G09840.1	TraesCS7D01G291200.3	AT1G71830.1	15592873
AT3G09840.1	TraesCS2A01G343100.1	AT1G71830.1	16473966
AT3G09840.1	TraesCS2B01G340700.1	AT1G71830.1	16473966
AT3G09840.1	TraesCS2D01G321400.1	AT1G71830.1	16473966
AT3G09840.1	TraesCS6A01G203600.2	AT1G71830.1	16473966
AT3G09840.1	TraesCS6B01G223700.3	AT1G71830.1	16473966
AT3G09840.1	TraesCS6D01G186900.2	AT1G71830.1	16473966
AT3G09840.1	TraesCS7A01G293300.3	AT1G71830.1	16473966
AT3G09840.1	TraesCS7B01G182300.1	AT1G71830.1	16473966
AT3G09840.1	TraesCS7D01G291200.3	AT1G71830.1	16473966
AT3G09840.1	TraesCS2A01G343100.1	AT1G71830.1	16621602
AT3G09840.1	TraesCS2B01G340700.1	AT1G71830.1	16621602
AT3G09840.1	TraesCS2D01G321400.1	AT1G71830.1	16621602
AT3G09840.1	TraesCS6A01G203600.2	AT1G71830.1	16621602
AT3G09840.1	TraesCS6B01G223700.3	AT1G71830.1	16621602
AT3G09840.1	TraesCS6D01G186900.2	AT1G71830.1	16621602
AT3G09840.1	TraesCS7A01G293300.3	AT1G71830.1	16621602
AT3G09840.1	TraesCS7B01G182300.1	AT1G71830.1	16621602
AT3G09840.1	TraesCS7D01G291200.3	AT1G71830.1	16621602
AT3G09840.1	TraesCS2A01G343100.1	AT1G71830.1	17693538
AT3G09840.1	TraesCS2B01G340700.1	AT1G71830.1	17693538
AT3G09840.1	TraesCS2D01G321400.1	AT1G71830.1	17693538
AT3G09840.1	TraesCS6A01G203600.2	AT1G71830.1	17693538
AT3G09840.1	TraesCS6B01G223700.3	AT1G71830.1	17693538
AT3G09840.1	TraesCS6D01G186900.2	AT1G71830.1	17693538
AT3G09840.1	TraesCS7A01G293300.3	AT1G71830.1	17693538
AT3G09840.1	TraesCS7B01G182300.1	AT1G71830.1	17693538
AT3G09840.1	TraesCS7D01G291200.3	AT1G71830.1	17693538
AT3G09840.1	TraesCS1A01G248500.1	AT3G09840.1	15592873
AT3G09840.1	TraesCS1B01G259200.1	AT3G09840.1	15592873
AT3G09840.1	TraesCS1B01G419200.1	AT3G09840.1	15592873
AT3G09840.1	TraesCS3A01G144500.1	AT3G09840.1	15592873
AT3G09840.1	TraesCS3A01G145000.1	AT3G09840.1	15592873
AT3G09840.1	TraesCS3A01G145100.1	AT3G09840.1	15592873
AT3G09840.1	TraesCS3B01G154400.1	AT3G09840.1	15592873
AT3G09840.1	TraesCS3B01G171200.1	AT3G09840.1	15592873
AT3G09840.1	TraesCS3B01G171300.1	AT3G09840.1	15592873
AT3G09840.1	TraesCS3B01G171400.1	AT3G09840.1	15592873
AT3G09840.1	TraesCS3B01G172000.1	AT3G09840.1	15592873
AT3G09840.1	TraesCS3B01G172100.1	AT3G09840.1	15592873
AT3G09840.1	TraesCS5B01G323100.1	AT3G09840.1	15592873
AT3G09840.1	TraesCSU01G001000.1	AT3G09840.1	15592873
AT3G09840.1	TraesCS1A01G248500.1	AT3G09840.1	16621602
AT3G09840.1	TraesCS1B01G259200.1	AT3G09840.1	16621602
AT3G09840.1	TraesCS1B01G419200.1	AT3G09840.1	16621602
AT3G09840.1	TraesCS3A01G144500.1	AT3G09840.1	16621602
AT3G09840.1	TraesCS3A01G145000.1	AT3G09840.1	16621602
AT3G09840.1	TraesCS3A01G145100.1	AT3G09840.1	16621602
AT3G09840.1	TraesCS3B01G154400.1	AT3G09840.1	16621602
AT3G09840.1	TraesCS3B01G171200.1	AT3G09840.1	16621602
AT3G09840.1	TraesCS3B01G171300.1	AT3G09840.1	16621602
AT3G09840.1	TraesCS3B01G171400.1	AT3G09840.1	16621602
AT3G09840.1	TraesCS3B01G172000.1	AT3G09840.1	16621602
AT3G09840.1	TraesCS3B01G172100.1	AT3G09840.1	16621602
AT3G09840.1	TraesCS5B01G323100.1	AT3G09840.1	16621602
AT3G09840.1	TraesCSU01G001000.1	AT3G09840.1	16621602
AT3G09840.1	TraesCS1A01G248500.1	AT3G09840.1	17693538
AT3G09840.1	TraesCS1B01G259200.1	AT3G09840.1	17693538
AT3G09840.1	TraesCS1B01G419200.1	AT3G09840.1	17693538
AT3G09840.1	TraesCS3A01G144500.1	AT3G09840.1	17693538
AT3G09840.1	TraesCS3A01G145000.1	AT3G09840.1	17693538
AT3G09840.1	TraesCS3A01G145100.1	AT3G09840.1	17693538
AT3G09840.1	TraesCS3B01G154400.1	AT3G09840.1	17693538
AT3G09840.1	TraesCS3B01G171200.1	AT3G09840.1	17693538
AT3G09840.1	TraesCS3B01G171300.1	AT3G09840.1	17693538
AT3G09840.1	TraesCS3B01G171400.1	AT3G09840.1	17693538
AT3G09840.1	TraesCS3B01G172000.1	AT3G09840.1	17693538
AT3G09840.1	TraesCS3B01G172100.1	AT3G09840.1	17693538
AT3G09840.1	TraesCS5B01G323100.1	AT3G09840.1	17693538
AT3G09840.1	TraesCSU01G001000.1	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G399100.1	Wheat	cytosol	98.1	98.1
TraesCS3B01G154400.1	Wheat	cytosol	95.94	96.07
TraesCS3B01G172100.1	Wheat	cytosol	95.56	95.44
TraesCS1B01G259200.1	Wheat	cytosol	95.44	95.44
TraesCS3B01G171200.1	Wheat	cytosol	95.31	95.43
TraesCS3B01G172000.1	Wheat	cytosol	93.92	94.52
TraesCS3B01G171400.1	Wheat	cytosol	86.95	94.36
HORVU0Hr1G006340.1	Barley	cytosol	94.17	94.29
TraesCS3B01G171300.1	Wheat	cytosol	85.04	92.04
HORVU3Hr1G029450.1	Barley	cytosol	94.17	91.96
HORVU3Hr1G029440.1	Barley	cytosol	94.17	91.28
TraesCS5B01G323100.1	Wheat	cytosol	66.03	89.67
KRG99061	Soybean	cytosol	21.67	85.5
EER95525	Sorghum	cytosol	84.16	85.13
TraesCS1B01G235400.1	Wheat	cytosol	69.2	85.05
KXG40206	Sorghum	cytosol	84.03	84.78
KRG94277	Soybean	cytosol	22.18	84.54
VIT_08s0040g01480.t01	Wine grape	cytosol	84.41	82.63
CDY11249	Canola	cytosol	83.14	82.21
KRH67721	Soybean	endoplasmic reticulum, nucleus	84.03	82.05
CDX73996	Canola	cytosol	84.03	81.95
Bra001297.1-P	Field mustard	cytosol	84.03	81.95
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	83.9	81.93
PGSC0003DMT400050662	Potato	cytosol	83.52	81.86
AT3G09840.1	Thale cress	cytosol	83.9	81.83
CDY07941	Canola	cytosol	83.9	81.83
CDY41316	Canola	cytosol, extracellular	83.9	81.73
TraesCS4B01G268400.1	Wheat	golgi	84.16	81.67
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	83.9	81.63
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	83.27	81.61
PGSC0003DMT400031321	Potato	cytosol	83.27	81.61
Solyc06g074980.2.1	Tomato	nucleus	83.27	81.61
Bra034089.1-P	Field mustard	cytosol	83.78	81.6
AT5G03340.1	Thale cress	cytosol	83.78	81.6
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	83.52	81.56
PGSC0003DMT400027096	Potato	cytosol	83.52	81.56
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	83.4	81.54
Bra003123.1-P	Field mustard	cytosol	83.65	81.48
CDY22207	Canola	cytosol	83.65	81.48
CDY13308	Canola	cytosol	83.65	81.48
CDY54618	Canola	cytosol	83.4	81.44
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	83.9	81.43
TraesCS4B01G268200.1	Wheat	cytosol	84.28	81.4
CDY41581	Canola	cytosol	83.27	81.31
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	83.14	81.29
Bra029795.1-P	Field mustard	cytosol	83.27	81.21
TraesCS1B01G235300.1	Wheat	cytosol	82.26	81.12
AT3G53230.1	Thale cress	cytosol	83.52	80.86
CDX80862	Canola	cytosol, plastid	82.89	80.84
PGSC0003DMT400055513	Potato	cytosol	82.64	80.79
TraesCS1B01G192400.1	Wheat	cytosol	82.64	80.69
TraesCS1B01G235500.1	Wheat	cytosol	81.75	80.62
KRH30601	Soybean	cytosol	82.26	80.52
Bra006978.1-P	Field mustard	cytosol	82.26	80.02
Solyc09g008070.2.1	Tomato	cytosol, unclear	81.75	79.83
VIT_06s0061g00340.t01	Wine grape	cytosol	77.31	79.74
CDX78154	Canola	cytosol	74.65	79.17
CDX73571	Canola	cytosol	73.89	78.47
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	71.74	78.18
CDX67563	Canola	cytosol	82.0	73.61
GSMUA_Achr3P00250_001	Banana	cytosol	18.12	72.96
KRH45638	Soybean	cytosol	25.73	63.24
Bra005733.1-P	Field mustard	cytosol	83.02	59.33
TraesCS2B01G373100.1	Wheat	cytosol	29.91	41.48
TraesCS3B01G487900.1	Wheat	mitochondrion	31.94	33.83
TraesCS7B01G280400.1	Wheat	cytosol, unclear	16.73	33.0
TraesCS6B01G188500.1	Wheat	cytosol	16.6	32.75
TraesCS7B01G060900.1	Wheat	golgi	17.62	32.63
TraesCS7B01G468900.1	Wheat	cytosol	16.35	32.41
TraesCS6B01G376500.1	Wheat	golgi	17.36	32.16
TraesCS2B01G100400.1	Wheat	cytosol, plastid	16.6	31.57
TraesCS2B01G499600.1	Wheat	cytosol	16.35	30.94
TraesCS7B01G036400.1	Wheat	cytosol	16.22	29.98
TraesCS3B01G457100.1	Wheat	cytosol, golgi	16.48	29.95
TraesCS6B01G207100.1	Wheat	cytosol	15.08	28.47
TraesCS2B01G494200.1	Wheat	cytosol	16.35	28.29
TraesCS7B01G254400.1	Wheat	cytosol	15.08	28.13
TraesCS2B01G493900.1	Wheat	cytosol	15.97	27.81
TraesCS4B01G189200.1	Wheat	cytosol	15.72	27.56
TraesCS2B01G105700.1	Wheat	cytosol	15.59	27.39
TraesCS1B01G089700.1	Wheat	cytosol, plastid	32.7	26.3
TraesCS4B01G108300.1	Wheat	plastid	33.21	26.2
TraesCS2B01G480000.3	Wheat	mitochondrion	27.76	23.47
TraesCS7B01G174800.1	Wheat	cytosol	22.69	17.38
TraesCS5B01G299200.1	Wheat	mitochondrion	23.95	17.28

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
InterPro:Cdc48_dom2	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933
PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072
SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	EnsemblPlantsGene:TraesCS1B01G419200
EnsemblPlants:TraesCS1B01G419200.1	InterPro:Vps4_C	TIGR:cd00009	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:-:642699010..642701379

Molecular Weight (calculated)

87281.5 Da

IEP (calculated)

4.944

GRAVY (calculated)

-0.284

Length

789 amino acids

Sequence
(BLAST)

001: MVSAAASKKA ANRLVVEEAA TNDDNSVCNL HPATMEKLSI FQGDIVLLKG KRRHNTVCMA LADDTCEGHK LRINKVARSN LRVRIADVVS VHLCHDAKFG
101: KRVHILPLDD TVEGITGNLF DTYLKPYFVD AFRPVHKGDL FLVRGGMRSV EFKVMEIDPA VDYCVVAPDT EIFCEGEPVK REDEERLDDV GYDDVGGMGK
201: PLTLIRELVE LPLRHPQIFK SIGVKPPKGI LLYGPPGSGK TLIARAVANE TGAFFFLING PEIMSKMAGE SESNLRKAFE EAEKNTPSII FIDEIDSIAP
301: NREKTHGEVE RRIVSQLLTL MDGMKARAHV IVMGATNRPN SIDPALRRFG RFDREIDIGV PDEVGRLEVL RIHTKNMKLD EDVNLELIAK DTHGYVGADL
401: AALCTEAALQ CIREKMDVID LEDDTIDAEI LNSMAVTNDH LKTALVGTNP SALRETVVEV PNVSWTDIGG LDGVKRELQE TVQYPVEHPE KFEKFGMSPS
501: KGVLFYGPPG CGKTLLAKAI ANECQANFIS IKGPELLTMW FGESEANVRE IFDKARQSAP CVLFFDELDS IATQRGGRMG DAGGAADRVL NQLLTEMDGM
601: NAKKTVFIIG ATNRPDIIDS ALLRPGRLDQ LIYIPLPDEA SRHQIFKACL RKSPVAKDVD LGALARFTAG FSGADITEIC QRACKYAIRE DIEKDMERQR
701: MEKDTLDVDG GQKDEEMAEI KAAHFEESMK YARRSVSDAD IRKYQAFAQT LQQSRGFGTE FRFLAQPQAA EAAADTTSAA DEDEDDLYK

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.