CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
cytosol 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 25806999
endoplasmic reticulum: 27224218

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	99.26	99.26
KRH67721	Soybean	endoplasmic reticulum, nucleus	93.93	93.81
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	93.93	93.81
KRH30601	Soybean	cytosol	93.06	93.18
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	93.56	93.09
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	93.56	92.87
KRG99061	Soybean	cytosol	22.92	92.5
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	92.57	92.34
GSMUA_Achr4P26800_001	Banana	cytosol	92.19	91.97
Zm00001d027707_P001	Maize	cytosol, plasma membrane	91.82	91.82
Zm00001d048409_P001	Maize	cytosol	91.08	91.42
KRG94277	Soybean	cytosol	23.42	91.3
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	91.08	90.85
Zm00001d032859_P006	Maize	plasma membrane	90.95	90.62
Zm00001d014124_P001	Maize	cytosol, plasma membrane	90.71	90.26
KRH63585	Soybean	endoplasmic reticulum	90.46	89.68
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	90.21	89.43
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	79.8	88.95
GSMUA_Achr9P23550_001	Banana	mitochondrion	88.6	88.71
TraesCSU01G001000.1	Wheat	cytosol	85.38	85.8
TraesCS3B01G154400.1	Wheat	cytosol	81.66	83.63
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	20.2	83.59
TraesCS3A01G144500.1	Wheat	cytosol	55.14	83.49
EER95525	Sorghum	cytosol	80.67	83.46
KXG40206	Sorghum	cytosol	80.67	83.25
TraesCS1B01G419200.1	Wheat	cytosol	81.29	83.14
TraesCS3A01G145100.1	Wheat	cytosol	81.29	83.14
HORVU0Hr1G006340.1	Barley	cytosol	81.16	83.12
TraesCS3B01G171200.1	Wheat	cytosol	81.16	83.12
TraesCS3B01G171400.1	Wheat	cytosol	74.72	82.94
TraesCS1B01G259200.1	Wheat	cytosol	80.79	82.64
TraesCS3B01G172000.1	Wheat	cytosol	80.17	82.53
TraesCS3B01G172100.1	Wheat	cytosol	80.55	82.28
TraesCS3A01G145000.1	Wheat	cytosol	70.63	81.9
HORVU3Hr1G029450.1	Barley	cytosol	81.16	81.06
HORVU3Hr1G029440.1	Barley	cytosol	81.16	80.47
TraesCS3B01G171300.1	Wheat	cytosol	72.0	79.7
TraesCS5B01G323100.1	Wheat	cytosol	57.37	79.69
TraesCS1A01G248500.1	Wheat	cytosol	58.61	79.23
Zm00001d032117_P001	Maize	cytosol	27.39	69.06
KRH45638	Soybean	cytosol	27.01	67.91
KRH70928	Soybean	cytosol	28.0	37.29
KRH51796	Soybean	cytosol	16.73	33.92
KRH61120	Soybean	endoplasmic reticulum	16.73	33.92
KRH05868	Soybean	cytosol, nucleus	16.73	33.83
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	16.73	33.83
KRH44049	Soybean	nucleus	32.84	33.5
KRH47728	Soybean	cytosol, nucleus	17.47	33.1
KRG97280	Soybean	cytosol, nucleus	17.47	33.1
KRH69005	Soybean	nucleus	17.47	33.1
KRH06311	Soybean	cytosol	17.47	33.1
KRH33891	Soybean	endoplasmic reticulum, nucleus	15.61	29.79
KRG92899	Soybean	cytosol, nucleus	15.61	29.79
KRG98107	Soybean	cytosol	15.49	29.62
KRH19693	Soybean	cytosol	16.23	29.57
KRH32292	Soybean	cytosol, nucleus	16.23	29.57
KRH30673	Soybean	cytosol, nucleus	15.49	29.55
KRH30674	Soybean	cytosol, nucleus	15.12	29.54
KRG95799	Soybean	cytosol, nucleus	16.23	29.37
KRH67524	Soybean	nucleus	16.23	29.37
KRH06953	Soybean	cytosol	9.79	29.26
KRH46990	Soybean	nucleus	15.12	29.19
KRH44668	Soybean	cytosol, mitochondrion, nucleus	15.12	29.19
KRH68501	Soybean	nucleus	14.99	28.47
KRH45565	Soybean	endoplasmic reticulum	7.06	27.94
KRH10420	Soybean	mitochondrion	16.85	27.47
KRH51488	Soybean	mitochondrion	14.13	26.95
KRH66707	Soybean	plastid	34.32	26.48
KRG96790	Soybean	mitochondrion	10.78	26.2
KRG95054	Soybean	plastid	23.54	24.64
KRG96401	Soybean	mitochondrion	27.76	24.37
KRH68139	Soybean	cytosol	18.84	22.69
KRH00031	Soybean	plastid	9.42	22.03
KRH50491	Soybean	cytosol	26.39	18.85

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	EntrezGene:547850
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf
InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	EMBL:DQ359725	EnsemblPlantsGene:GLYMA_13G323600	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	EnsemblPlants:KRH22853
ProteinID:KRH22853	ProteinID:KRH22853.1	InterPro:P-loop_NTPase	UniProt:P54774	PFAM:PF00004	PFAM:PF02359
PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	UniProt:Q2HZ34	SMART:SM00382
SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243
EMBL:U20213	UniParc:UPI0000127251	SEG:seg	:	:	:

Description

CDC48hypothetical protein

Coordinates

chr13:+:41809774..41815441

Molecular Weight (calculated)

89774.9 Da

IEP (calculated)

4.947

GRAVY (calculated)

-0.418

Length

807 amino acids

Sequence
(BLAST)

001: MSQQGESSDP KSGKKDFSTA ILERKKSPNR LVVDEAVNDD NSVVTMHPQT MEKLQLFRGD TILIKGKKRK DTICIALADE NCEEPKIRMN KVVRSNLRVR
101: LGDVVSVHQC PDVKYGKRVH ILPIDDTIEG VTGNLFDAFL KPYFLEAYRP VRKGDLFLVR GGMRSVEFKV VETDPGEYCV VAPDTEIFCE GEPLKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVIGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEVG RLEVLRIHTK NMKLSDDVDL
401: ERIAKDTHGY VGADLAALCT EAALQCIREK MDVIDLEDET IDAEVLNSMA VTNEHFQTAL GTSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISVKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GSSVGDAGGA
601: ADRVLNQLLT EMDGMSAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEDSRHQI FKACLRKSPI AKNVDLRALA RHTQGFSGAD ITEICQRACK
701: YAIRENIEKD IERERKSREN PEAMDEDTVD DEVAEIKAAH FEESMKFARR SVSDADIRKY QAFAQTLQQS RGFGSEFRFP ESGDRTTTGS DPFAASAGGA
801: DEDDLYS

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.