Factsheet for GSMUA_Achr5P15500_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P14850_001
GSMUA_Achr4P26800_001
GSMUA_Achr5P15500_001
GSMUA_Achr7P11620_001
GSMUA_Achr7P17210_001
GSMUA_Achr9P23550_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	15592873
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	15592873
AT3G09840.1	GSMUA_Achr2P14850_001	AT1G71830.1	15592873
AT3G09840.1	GSMUA_Achr7P11620_001	AT1G71830.1	15592873
AT3G09840.1	GSMUA_Achr7P17210_001	AT1G71830.1	15592873
AT3G09840.1	GSMUA_AchrUn_...	AT1G71830.1	15592873
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	16473966
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	16473966
AT3G09840.1	GSMUA_Achr2P14850_001	AT1G71830.1	16473966
AT3G09840.1	GSMUA_Achr7P11620_001	AT1G71830.1	16473966
AT3G09840.1	GSMUA_Achr7P17210_001	AT1G71830.1	16473966
AT3G09840.1	GSMUA_AchrUn_...	AT1G71830.1	16473966
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	16621602
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	16621602
AT3G09840.1	GSMUA_Achr2P14850_001	AT1G71830.1	16621602
AT3G09840.1	GSMUA_Achr7P11620_001	AT1G71830.1	16621602
AT3G09840.1	GSMUA_Achr7P17210_001	AT1G71830.1	16621602
AT3G09840.1	GSMUA_AchrUn_...	AT1G71830.1	16621602
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	17693538
AT3G09840.1	GSMUA_Achr10P...	AT1G71830.1	17693538
AT3G09840.1	GSMUA_Achr2P14850_001	AT1G71830.1	17693538
AT3G09840.1	GSMUA_Achr7P11620_001	AT1G71830.1	17693538
AT3G09840.1	GSMUA_Achr7P17210_001	AT1G71830.1	17693538
AT3G09840.1	GSMUA_AchrUn_...	AT1G71830.1	17693538
AT3G09840.1	GSMUA_Achr4P26800_001	AT3G09840.1	15592873
AT3G09840.1	GSMUA_Achr5P15500_001	AT3G09840.1	15592873
AT3G09840.1	GSMUA_Achr9P23550_001	AT3G09840.1	15592873
AT3G09840.1	GSMUA_Achr4P26800_001	AT3G09840.1	16621602
AT3G09840.1	GSMUA_Achr5P15500_001	AT3G09840.1	16621602
AT3G09840.1	GSMUA_Achr9P23550_001	AT3G09840.1	16621602
AT3G09840.1	GSMUA_Achr4P26800_001	AT3G09840.1	17693538
AT3G09840.1	GSMUA_Achr5P15500_001	AT3G09840.1	17693538
AT3G09840.1	GSMUA_Achr9P23550_001	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P26800_001	Banana	cytosol	97.28	97.28
GSMUA_Achr7P04540_001	Banana	cytosol	91.84	94.05
VIT_08s0040g01480.t01	Wine grape	cytosol	93.7	94.04
PGSC0003DMT400027096	Potato	cytosol	93.33	93.44
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	93.2	93.32
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	92.46	92.69
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	92.34	92.57
CDY11249	Canola	cytosol	90.98	92.23
PGSC0003DMT400055513	Potato	cytosol	91.97	92.19
CDY13308	Canola	cytosol	92.21	92.1
Solyc06g074980.2.1	Tomato	nucleus	91.59	92.05
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	91.35	91.8
PGSC0003DMT400031321	Potato	cytosol	91.35	91.8
PGSC0003DMT400050662	Potato	cytosol	91.35	91.8
Bra001297.1-P	Field mustard	cytosol	91.72	91.72
CDX73996	Canola	cytosol	91.72	91.72
CDY54618	Canola	cytosol	91.59	91.71
AT5G03340.1	Thale cress	cytosol	91.72	91.6
CDY22207	Canola	cytosol	91.72	91.6
Bra034089.1-P	Field mustard	cytosol	91.72	91.6
Bra003123.1-P	Field mustard	cytosol	91.72	91.6
CDY07941	Canola	cytosol	91.59	91.59
Bra029795.1-P	Field mustard	cytosol	91.59	91.59
CDY41581	Canola	cytosol	91.47	91.58
CDY41316	Canola	cytosol, extracellular	91.59	91.48
AT3G09840.1	Thale cress	cytosol	91.22	91.22
CDX80862	Canola	cytosol, plastid	91.1	91.1
AT3G53230.1	Thale cress	cytosol	91.72	91.04
GSMUA_Achr9P23550_001	Banana	mitochondrion	90.23	90.57
Solyc09g008070.2.1	Tomato	cytosol, unclear	90.36	90.47
Bra006978.1-P	Field mustard	cytosol	89.25	89.03
GSMUA_Achr3P00250_001	Banana	cytosol	21.26	87.76
GSMUA_Achr3P00260_001	Banana	cytosol	52.9	87.7
VIT_06s0061g00340.t01	Wine grape	cytosol	81.09	85.75
CDX67563	Canola	cytosol	89.49	82.37
GSMUA_Achr5P13290_001	Banana	cytosol	22.0	80.91
Bra005733.1-P	Field mustard	cytosol	91.84	67.3
GSMUA_Achr6P29120_001	Banana	cytosol	29.17	39.33
GSMUA_Achr6P11080_001	Banana	plastid	28.92	39.07
GSMUA_Achr6P12250_001	Banana	cytosol	13.6	36.3
GSMUA_AchrUn_...	Banana	cytosol	7.66	34.83
GSMUA_AchrUn_...	Banana	cytosol	17.18	34.66
GSMUA_Achr11P...	Banana	cytosol	13.84	34.36
GSMUA_Achr7P17620_001	Banana	cytosol	17.18	33.9
GSMUA_Achr4P03560_001	Banana	mitochondrion	32.76	33.89
GSMUA_Achr4P03720_001	Banana	cytosol	16.32	33.17
GSMUA_AchrUn_...	Banana	cytosol	17.31	32.94
GSMUA_Achr8P16830_001	Banana	cytosol	17.18	32.71
GSMUA_Achr7P09950_001	Banana	cytosol	14.96	30.02
GSMUA_Achr10P...	Banana	cytosol	15.45	29.76
GSMUA_Achr5P04520_001	Banana	cytosol	14.71	29.38
GSMUA_Achr4P05850_001	Banana	cytosol	15.33	29.25
GSMUA_Achr9P13230_001	Banana	cytosol	14.59	29.14
GSMUA_Achr4P05840_001	Banana	cytosol	14.96	28.74
GSMUA_Achr3P04570_001	Banana	cytosol	14.59	27.9
GSMUA_Achr7P21960_001	Banana	cytosol	15.82	26.45
GSMUA_Achr6P20030_001	Banana	cytosol	27.81	23.29
GSMUA_Achr11P...	Banana	cytosol	25.59	18.47

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr5G15500_001	EnsemblPlants:GSMUA_Achr5P15500_001	EnsemblPlants:GSMUA_Achr5T15500_001	UniProt:M0SYS9	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122
SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585
TIGRFAMs:TIGR01243	UniParc:UPI000295D97C	SEG:seg	:	:	:

Description

Cell division cycle protein 48 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr5G15500_001]

Coordinates

chr5:+:11456158..11463730

Molecular Weight (calculated)

89780.9 Da

IEP (calculated)

4.889

GRAVY (calculated)

-0.398

Length

809 amino acids

Sequence
(BLAST)

001: MANKGDASSS DPKGKKDYST AILEKKKAPN RLIVDEAVND DNSVVSMNPE TMEKLQLFRG DTILLKGKKR RDTICIALAD ETCDEPKIRM NKVVRSNLRV
101: RLGDVVSVHQ CQDVKYGKRV HILPIDDTIE GVTGNLFDAY LKPYFLEAYR PVRKGDLFLV RGGMRSVEFK VIETDPAEYC VVAPDTEIFC EGEPIKREDE
201: DRLDEVGYDD VGGVRKQMAQ IRELVELPLR HPQLFKSIGV KPPKGILLYG PPGSGKTLIA RAVANETGAF FFCINGPEIM SKLAGESESN LRKAFEEAEK
301: NAPSIIFIDE IDSIAPKREK THGEVERRIV SQLLTLMDGL KSRSHVIVIG ATNRPNSIDP ALRRFGRFDR EIDIGVPDEV GRLEVLRIHT KNMKLAEDVD
401: LERIAKDTHG YVGADLAALC TEAALQCIRE KMDIIDLEDE SIDAEILNSM AVTNEHFKTA LGSSNPSALR ETVVEVPNVS WEDIGGLDNV KRELQETVQY
501: PVEHPEKFEK FGMSPSKGVL FYGPPGCGKT LLAKAIANEC QANFISVKGP ELLTMWFGES EANVREIFDK ARQSAPCVLF FDELDSIATQ RGSSVGDAGG
601: AADRVLNQLL TEMDGMNAKK TVFIIGATNR PDIIDPALLR PGRLDQLIYI PLPDEASRFQ IFKACLRKSP VSKDVDLRAL AKYTQGFSGA DITEICQRAC
701: KYAIRENIEK DIEREKRKSE NPEAMEEDET DEVAEIKAAH FEESMKFARR SVSDADIRKY QAFAQTLQQS RGFGSEFRFS ERSESAAGGA GADPFATSAG
801: AADDDDLYS

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.