Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 6
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05840_001 | Banana | cytosol | 97.17 | 97.86 |
| KRH67524 | Soybean | nucleus | 95.75 | 91.03 |
| KRH32292 | Soybean | cytosol, nucleus | 95.05 | 90.97 |
| KRG95799 | Soybean | cytosol, nucleus | 95.52 | 90.81 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 95.28 | 90.79 |
| KRH19693 | Soybean | cytosol | 94.81 | 90.74 |
| Solyc06g083620.2.1 | Tomato | nucleus, plastid | 94.34 | 90.09 |
| PGSC0003DMT400040872 | Potato | cytosol | 94.1 | 89.86 |
| PGSC0003DMT400051744 | Potato | cytosol | 93.87 | 89.64 |
| Os03t0298400-01 | Rice | plasma membrane | 95.05 | 89.56 |
| TraesCS2A01G090000.1 | Wheat | cytosol | 94.81 | 89.53 |
| Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 94.58 | 89.51 |
| TraesCS2D01G087900.1 | Wheat | cytosol, golgi | 94.58 | 89.31 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 94.58 | 89.31 |
| Zm00001d022573_P001 | Maize | cytosol, extracellular, plasma membrane | 94.1 | 89.26 |
| EER99961 | Sorghum | cytosol | 94.1 | 89.26 |
| AT4G29040.1 | Thale cress | cytosol | 92.69 | 88.71 |
| CDY35245 | Canola | cytosol | 92.69 | 88.71 |
| Bra011079.1-P | Field mustard | cytosol | 92.69 | 88.71 |
| CDX97472 | Canola | cytosol | 92.92 | 88.54 |
| CDY06847 | Canola | cytosol | 92.45 | 88.49 |
| AT2G20140.1 | Thale cress | cytosol | 92.45 | 88.49 |
| TraesCS4B01G189200.1 | Wheat | cytosol | 93.87 | 88.44 |
| TraesCS4D01G190600.1 | Wheat | cytosol, golgi | 93.87 | 88.44 |
| HORVU4Hr1G055060.1 | Barley | cytosol | 93.87 | 88.44 |
| CDX92914 | Canola | cytosol, extracellular | 92.22 | 88.26 |
| TraesCS4A01G115000.1 | Wheat | cytosol | 93.63 | 88.22 |
| Zm00001d028801_P001 | Maize | cytosol, extracellular | 92.69 | 88.12 |
| Bra010342.1-P | Field mustard | cytosol | 92.45 | 88.09 |
| CDY14224 | Canola | cytosol | 92.45 | 88.09 |
| Zm00001d007215_P001 | Maize | cytosol | 94.81 | 86.64 |
| HORVU2Hr1G014770.2 | Barley | cytosol, plastid | 87.03 | 83.67 |
| CDY59958 | Canola | cytosol | 64.86 | 75.55 |
| Bra024165.1-P | Field mustard | cytosol | 57.55 | 75.54 |
| HORVU3Hr1G095530.3 | Barley | mitochondrion, plastid | 41.04 | 69.32 |
| HORVU1Hr1G091080.1 | Barley | mitochondrion, plastid | 40.57 | 68.53 |
| GSMUA_Achr6P12250_001 | Banana | cytosol | 38.44 | 53.8 |
| GSMUA_Achr11P... | Banana | cytosol | 40.57 | 52.76 |
| GSMUA_AchrUn_... | Banana | cytosol | 20.99 | 50.0 |
| GSMUA_Achr7P09950_001 | Banana | cytosol | 40.33 | 42.43 |
| GSMUA_Achr9P13230_001 | Banana | cytosol | 40.09 | 41.98 |
| GSMUA_Achr5P04520_001 | Banana | cytosol | 40.09 | 41.98 |
| GSMUA_Achr4P03720_001 | Banana | cytosol | 38.92 | 41.46 |
| GSMUA_Achr10P... | Banana | cytosol | 40.8 | 41.19 |
| GSMUA_AchrUn_... | Banana | cytosol | 38.92 | 41.15 |
| GSMUA_Achr7P17620_001 | Banana | cytosol | 38.68 | 40.0 |
| GSMUA_Achr3P04570_001 | Banana | cytosol | 38.44 | 38.53 |
| GSMUA_Achr8P16830_001 | Banana | cytosol | 37.97 | 37.88 |
| GSMUA_AchrUn_... | Banana | cytosol | 37.97 | 37.88 |
| GSMUA_Achr7P21960_001 | Banana | cytosol | 42.45 | 37.19 |
| GSMUA_Achr5P13290_001 | Banana | cytosol | 13.21 | 25.45 |
| GSMUA_Achr3P00250_001 | Banana | cytosol | 9.67 | 20.92 |
| GSMUA_Achr6P11080_001 | Banana | plastid | 29.01 | 20.53 |
| GSMUA_Achr6P29120_001 | Banana | cytosol | 26.18 | 18.5 |
| GSMUA_Achr4P03560_001 | Banana | mitochondrion | 29.01 | 15.73 |
| GSMUA_Achr5P15500_001 | Banana | cytosol, plasma membrane | 29.25 | 15.33 |
| GSMUA_Achr7P04540_001 | Banana | cytosol | 28.54 | 15.32 |
| GSMUA_Achr4P26800_001 | Banana | cytosol | 28.77 | 15.08 |
| GSMUA_Achr9P23550_001 | Banana | mitochondrion | 28.3 | 14.89 |
| GSMUA_Achr3P00260_001 | Banana | cytosol | 15.33 | 13.32 |
| GSMUA_Achr6P20030_001 | Banana | cytosol | 27.59 | 12.11 |
| GSMUA_Achr11P... | Banana | cytosol | 27.59 | 10.44 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.2 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 | EnsemblPlantsGene:GSMUA_Achr4G05850_001 |
| EnsemblPlants:GSMUA_Achr4P05850_001 | EnsemblPlants:GSMUA_Achr4T05850_001 | UniProt:M0SLF2 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 |
| PANTHER:PTHR23073 | PANTHER:PTHR23073:SF61 | SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | UniParc:UPI000296F5DB |
| SEG:seg | : | : | : | : | : |
Description
26S protease regulatory subunit 4 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr4G05850_001]
Coordinates
chr4:-:4539541..4545032
Molecular Weight (calculated)
47122.9 Da
IEP (calculated)
6.810
GRAVY (calculated)
-0.477
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQGTPGGMG KQGPPGDRKR DGDKKDKKFE PAAPPSRVGR KQRRQKGPEA AARLPAVTPL SKCRLRERLR PQEEKNEEDR SKVDDLRGSP MSVGNLEELI
101: DENHAIVSSS VGPEYYVSIL SFVDKDQLEP GCAILMHNKV LSVVGLLQDE VDPMVSVMKV EKAPLESYAD IGGLDSQIQE IKEAVELPLT HPELYEDIGI
201: RPPKGVILYG EPGTGKTLLA KAVANSTSAT FLRVVGSELI QKYLGDGPKL VRELFRVADE LSPSIVFIDE IDAVGTKRYD AHSGGEREIQ RTMLELLNQL
301: DGFDSRGDVK VILATNRIES LDPALLRPGR IDRKIEFPLP DIKTRRRIFQ IHTSRMTLAD DVNLEEFVMT KDEFSGADIK AICTEAGLLA LRERRMKVTH
401: ADFKKAKEKV MFKKKEGVPE GLYM
101: DENHAIVSSS VGPEYYVSIL SFVDKDQLEP GCAILMHNKV LSVVGLLQDE VDPMVSVMKV EKAPLESYAD IGGLDSQIQE IKEAVELPLT HPELYEDIGI
201: RPPKGVILYG EPGTGKTLLA KAVANSTSAT FLRVVGSELI QKYLGDGPKL VRELFRVADE LSPSIVFIDE IDAVGTKRYD AHSGGEREIQ RTMLELLNQL
301: DGFDSRGDVK VILATNRIES LDPALLRPGR IDRKIEFPLP DIKTRRRIFQ IHTSRMTLAD DVNLEEFVMT KDEFSGADIK AICTEAGLLA LRERRMKVTH
401: ADFKKAKEKV MFKKKEGVPE GLYM
001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
Arabidopsis Description
RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.