Factsheet for GSMUA_Achr4P00300_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P21280_001	Banana	cytosol	83.15	96.94
GSMUA_Achr6P02000_001	Banana	cytosol	66.67	91.75
KRH65617	Soybean	nucleus	83.9	89.6
KRH76017	Soybean	cytosol	83.9	89.6
KRH00322	Soybean	cytosol	83.52	89.2
KRH49455	Soybean	endoplasmic reticulum, nucleus	83.15	88.8
PGSC0003DMT400018852	Potato	cytosol	82.4	88.71
Solyc02g081700.1.1	Tomato	extracellular	82.02	88.31
VIT_10s0042g00070.t01	Wine grape	cytosol	82.4	88.0
Bra023851.1-P	Field mustard	cytosol	82.02	87.6
Bra031328.1-P	Field mustard	cytosol, mitochondrion	81.27	86.8
CDY37382	Canola	cytosol	65.17	86.57
AT3G22110.1	Thale cress	cytosol, mitochondrion	80.9	86.4
CDY66240	Canola	extracellular	65.17	85.71
CDY69258	Canola	cytosol, mitochondrion	66.67	85.58
CDY39501	Canola	cytosol, mitochondrion	64.42	85.57
CDY19309	Canola	extracellular	64.04	85.07
Zm00001d045194_P001	Maize	extracellular	79.4	84.8
OQU75904	Sorghum	cytosol	79.03	84.4
AT4G15165.1	Thale cress	cytosol	65.54	84.13
Zm00001d036319_P001	Maize	cytosol	78.65	84.0
TraesCS7D01G129900.1	Wheat	cytosol	77.15	82.4
TraesCS7B01G030800.1	Wheat	plastid	77.15	82.4
TraesCS7A01G130500.1	Wheat	plastid	77.15	82.4
Os06t0177100-01	Rice	plastid	77.15	82.4
Os06t0176000-01	Rice	cytosol	77.15	82.4
Os06t0167600-01	Rice	cytosol	77.15	82.4
HORVU7Hr1G027220.2	Barley	cytosol	73.78	74.34
Bra037085.1-P	Field mustard	cytosol	81.27	70.45
GSMUA_Achr11P...	Banana	peroxisome	35.58	40.08
GSMUA_Achr10P...	Banana	peroxisome	35.21	39.66
GSMUA_Achr8P13980_001	Banana	cytosol	31.46	35.74
GSMUA_Achr5P19360_001	Banana	cytosol	31.09	35.32
GSMUA_Achr11P...	Banana	cytosol	32.21	34.54
GSMUA_Achr2P03470_001	Banana	cytosol	31.84	34.14
GSMUA_Achr10P...	Banana	cytosol	30.71	33.33
GSMUA_Achr6P11610_001	Banana	cytosol	30.71	33.33
GSMUA_Achr6P10850_001	Banana	mitochondrion	34.46	30.16
GSMUA_Achr10P...	Banana	cytosol	29.59	29.81
GSMUA_Achr8P23960_001	Banana	cytosol	26.59	28.51
GSMUA_Achr4P10040_001	Banana	cytosol	25.84	27.71
GSMUA_Achr3P02110_001	Banana	cytosol	12.73	24.82

Protein Annotations

MapMan:19.2.6.1.1.3	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
EnsemblPlantsGene:GSMUA_Achr4G00300_001	EnsemblPlants:GSMUA_Achr4P00300_001	EnsemblPlants:GSMUA_Achr4T00300_001	InterPro:IPR023332	InterPro:IPR029055	UniProt:M0SJU7
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599
PANTHER:PTHR11599:SF13	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha4	SMART:SM00948
SUPFAM:SSF56235	UniParc:UPI00029695C5	SEG:seg	:	:	:

Description

Proteasome subunit alpha type-4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G00300_001]

Coordinates

chr4:+:256537..260008

Molecular Weight (calculated)

29658.6 Da

IEP (calculated)

6.362

GRAVY (calculated)

-0.255

Length

267 amino acids

Sequence
(BLAST)

001: MIANKCMLTP THNLLHEMSR RYDSRTTIFS PEGRLYQVEY AMEAIGNAGA AIGILARDGV ILVGEKKVTS KLLQTSRSTE KMYKIDDHLA CAVAGIMSDA
101: NILINTARVQ AQRYTFAYQE PMPIEQLVQS LCDTKQGYTQ FGGLRPFGVS FLFAGWDKNY GFQLYMSDPS GNYSGWKAAA IGANHQAAQS MLKQDYKDDI
201: TREEAVQLAL KVLSKTMDST SLTSEKLELA EIFLEPSGDV KYEVCKPELL EKLLVKHGVT QATTESN

Best Arabidopsis Sequence Match ( AT3G22110.1 )
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLIGEKK VTSKLLQTST SAEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYTFM
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS

Arabidopsis Description

PAC1Proteasome subunit alpha type-4-A [Source:UniProtKB/Swiss-Prot;Acc:O81148]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.