Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39501 | Canola | cytosol, mitochondrion | 80.93 | 78.11 |
| CDY69258 | Canola | cytosol, mitochondrion | 83.51 | 77.88 |
| CDY19309 | Canola | extracellular | 80.41 | 77.61 |
| AT4G15165.1 | Thale cress | cytosol | 82.47 | 76.92 |
| GSMUA_Achr7P21280_001 | Banana | cytosol | 82.47 | 69.87 |
| KRH00322 | Soybean | cytosol | 87.11 | 67.6 |
| KRH49455 | Soybean | endoplasmic reticulum, nucleus | 86.6 | 67.2 |
| CDY66240 | Canola | extracellular | 70.1 | 67.0 |
| GSMUA_Achr4P00300_001 | Banana | cytosol | 91.75 | 66.67 |
| VIT_10s0042g00070.t01 | Wine grape | cytosol | 85.05 | 66.0 |
| KRH76017 | Soybean | cytosol | 85.05 | 66.0 |
| KRH65617 | Soybean | nucleus | 85.05 | 66.0 |
| PGSC0003DMT400018852 | Potato | cytosol | 84.02 | 65.73 |
| Solyc02g081700.1.1 | Tomato | extracellular | 82.99 | 64.92 |
| Bra023851.1-P | Field mustard | cytosol | 83.51 | 64.8 |
| AT3G22110.1 | Thale cress | cytosol, mitochondrion | 82.99 | 64.4 |
| Bra031328.1-P | Field mustard | cytosol, mitochondrion | 82.47 | 64.0 |
| Zm00001d036319_P001 | Maize | cytosol | 81.96 | 63.6 |
| Zm00001d045194_P001 | Maize | extracellular | 81.96 | 63.6 |
| OQU75904 | Sorghum | cytosol | 81.44 | 63.2 |
| CDY37382 | Canola | cytosol | 65.46 | 63.18 |
| TraesCS7D01G129900.1 | Wheat | cytosol | 80.41 | 62.4 |
| TraesCS7B01G030800.1 | Wheat | plastid | 80.41 | 62.4 |
| TraesCS7A01G130500.1 | Wheat | plastid | 80.41 | 62.4 |
| Os06t0177100-01 | Rice | plastid | 80.41 | 62.4 |
| Os06t0176000-01 | Rice | cytosol | 80.41 | 62.4 |
| Os06t0167600-01 | Rice | cytosol | 80.41 | 62.4 |
| HORVU7Hr1G027220.2 | Barley | cytosol | 75.77 | 55.47 |
| Bra037085.1-P | Field mustard | cytosol | 82.99 | 52.27 |
| GSMUA_Achr11P... | Banana | peroxisome | 35.05 | 28.69 |
| GSMUA_Achr10P... | Banana | peroxisome | 35.05 | 28.69 |
| GSMUA_Achr11P... | Banana | cytosol | 34.02 | 26.51 |
| GSMUA_Achr2P03470_001 | Banana | cytosol | 33.51 | 26.1 |
| GSMUA_Achr6P11610_001 | Banana | cytosol | 30.93 | 24.39 |
| GSMUA_Achr10P... | Banana | cytosol | 30.41 | 23.98 |
| GSMUA_Achr8P23960_001 | Banana | cytosol | 28.35 | 22.09 |
| GSMUA_Achr4P10040_001 | Banana | cytosol | 28.35 | 22.09 |
| GSMUA_Achr8P13980_001 | Banana | cytosol | 26.29 | 21.7 |
| GSMUA_Achr5P19360_001 | Banana | cytosol | 26.29 | 21.7 |
| GSMUA_Achr6P10850_001 | Banana | mitochondrion | 33.51 | 21.31 |
| GSMUA_Achr10P... | Banana | cytosol | 27.84 | 20.38 |
| GSMUA_Achr3P02110_001 | Banana | cytosol | 10.31 | 14.6 |
Protein Annotations
| Gene3D:3.60.20.10 | MapMan:50.3.4 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 |
| GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005839 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 | GO:GO:0051603 |
| EnsemblPlantsGene:GSMUA_Achr6G02000_001 | EnsemblPlants:GSMUA_Achr6P02000_001 | EnsemblPlants:GSMUA_Achr6T02000_001 | InterPro:IPR023332 | InterPro:IPR029055 | UniProt:M0T3E8 |
| InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 | PFscan:PS51475 | PANTHER:PTHR11599 |
| PANTHER:PTHR11599:SF13 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | InterPro:Proteasome_subunit_alpha4 | SMART:SM00948 |
| SUPFAM:SSF56235 | UniParc:UPI000295B76D | SEG:seg | : | : | : |
Description
Proteasome subunit alpha type-4 [Source:GMGC_GENE;Acc:GSMUA_Achr6G02000_001]
Coordinates
chr6:+:1295394..1296171
Molecular Weight (calculated)
21389.8 Da
IEP (calculated)
7.189
GRAVY (calculated)
-0.181
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGAAIGILAR DGVVLVGEKK VTSKLLQTSR STEKMYKIDD HLACAVAGIM SDANILINTA RVQAQRWDKF
101: WIPAAAAIGA NNQAAQSMLK QDYKDEITRE EGVQLALKVL RKTMDSTSLT SEKLELAEIF LEPTGEVKYQ VCKPELLERL LVKCGVTQAA AEST
101: WIPAAAAIGA NNQAAQSMLK QDYKDEITRE EGVQLALKVL RKTMDSTSLT SEKLELAEIF LEPTGEVKYQ VCKPELLERL LVKCGVTQAA AEST
001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILAK DGVVLVGEKK VTSKLLQTSS SMEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRWDRN
101: HGFQLYMSDP SGNYGGWQAA AVGANNQAAQ SILKQDYKDD ATREEVVQLA IKVLSKTMDS TSLTAEKLEL AELYLTPSKC VKYHVHSPDS LTKLLVKHGV
201: TQPAAETS
101: HGFQLYMSDP SGNYGGWQAA AVGANNQAAQ SILKQDYKDD ATREEVVQLA IKVLSKTMDS TSLTAEKLEL AELYLTPSKC VKYHVHSPDS LTKLLVKHGV
201: TQPAAETS
Arabidopsis Description
PAC2Putative proteasome subunit alpha type-4-B [Source:UniProtKB/Swiss-Prot;Acc:F4JJE5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.