CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37382	Canola	cytosol	93.1	94.03
CDY39501	Canola	cytosol, mitochondrion	87.19	88.06
CDY19309	Canola	extracellular	86.7	87.56
Bra031328.1-P	Field mustard	cytosol, mitochondrion	99.51	80.8
CDY69258	Canola	cytosol, mitochondrion	81.28	79.33
AT3G22110.1	Thale cress	cytosol, mitochondrion	95.07	77.2
KRH00322	Soybean	cytosol	90.64	73.6
KRH49455	Soybean	endoplasmic reticulum, nucleus	89.66	72.8
KRH65617	Soybean	nucleus	89.16	72.4
KRH76017	Soybean	cytosol	89.16	72.4
VIT_10s0042g00070.t01	Wine grape	cytosol	88.67	72.0
Solyc02g081700.1.1	Tomato	extracellular	87.19	71.37
GSMUA_Achr6P02000_001	Banana	cytosol	67.0	70.1
PGSC0003DMT400049388	Potato	cytosol	85.22	69.48
Zm00001d045194_P001	Maize	extracellular	84.73	68.8
TraesCS7A01G130500.1	Wheat	plastid	83.74	68.0
TraesCS7B01G030800.1	Wheat	plastid	83.74	68.0
OQU75904	Sorghum	cytosol	83.74	68.0
TraesCS7D01G129900.1	Wheat	cytosol	83.74	68.0
Zm00001d036319_P001	Maize	cytosol	83.74	68.0
GSMUA_Achr7P21280_001	Banana	cytosol	76.35	67.69
Os06t0167600-01	Rice	cytosol	82.27	66.8
Os06t0176000-01	Rice	cytosol	82.27	66.8
Os06t0177100-01	Rice	plastid	82.27	66.8
GSMUA_Achr4P00300_001	Banana	cytosol	85.71	65.17
HORVU7Hr1G027220.2	Barley	cytosol	77.83	59.62
CDY08208	Canola	peroxisome	35.47	29.51
CDY51800	Canola	peroxisome	35.47	28.8
CDY26894	Canola	cytosol	31.03	26.81
CDX68003	Canola	cytosol, extracellular	31.03	26.81
CDY22253	Canola	cytosol	31.03	26.81
CDX79306	Canola	cytosol	31.03	26.81
CDX73737	Canola	cytosol, extracellular	33.0	26.8
CDY29009	Canola	cytosol	33.0	26.8
CDX77988	Canola	cytosol, extracellular	33.0	26.8
CDX90655	Canola	cytosol	33.0	26.8
CDY21248	Canola	cytosol	18.23	26.43
CDY02493	Canola	mitochondrion	36.45	26.43
CDY25683	Canola	cytosol, plastid	36.45	26.15
CDY33398	Canola	cytosol, extracellular	30.54	25.2
CDY18045	Canola	cytosol	30.54	25.2
CDY47593	Canola	cytosol	33.5	24.91
CDY50408	Canola	cytosol, extracellular	29.56	24.59
CDY17035	Canola	cytosol	33.0	24.54
CDX71518	Canola	cytosol	32.51	24.35
CDY02422	Canola	cytosol	32.51	24.35
CDY52371	Canola	cytosol	32.51	24.0
CDX95156	Canola	cytosol	32.51	23.83
CDX93103	Canola	cytosol	30.54	23.57
CDY04473	Canola	cytosol	28.57	23.29
CDX71476	Canola	cytosol	28.57	23.29
CDX77059	Canola	cytosol	28.57	23.29
CDY48190	Canola	cytosol	28.57	23.29
CDX81411	Canola	mitochondrion, plastid	29.56	21.2
CDX88517	Canola	cytosol	31.03	20.52
CDX87400	Canola	extracellular	31.03	19.69

Protein Annotations

Gene3D:3.60.20.10	MapMan:35.1	GO:A0A078JIE4	UniProt:A0A078JIE4	EnsemblPlants:CDY66240	ProteinID:CDY66240
ProteinID:CDY66240.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00052362001
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PANTHER:PTHR11599
PANTHER:PTHR11599:SF13	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha4	SMART:SM00948	SUPFAM:SSF56235
UniParc:UPI0004EE0CE9	SEG:seg	:	:	:	:

Description

BnaAnng21900DProteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A078JIE4]

Coordinates

chrLK035161:-:16672..18050

Molecular Weight (calculated)

22072.1 Da

IEP (calculated)

7.706

GRAVY (calculated)

-0.346

Length

203 amino acids

Sequence
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLIGEKK VTSKLLQTST SSEKMYKIDD HLVQSLCDTK QGYTQFGGLR PFGVSFLFAG
101: WDKNHGGNYG GWKAAAVGAN NQAAQSILKQ DYKEDATREE AVELALKVLS KTMDSTSLTS EKLELAEVFL TPSGSVKYHV HSPDSLTKLL LKHGVTQPAA
201: ESS

Best Arabidopsis Sequence Match ( AT3G22110.1 )
(BLAST)

001: MSRRYDSRTT IFSPEGRLYQ VEYAMEAIGN AGSAIGILSK DGVVLIGEKK VTSKLLQTST SAEKMYKIDD HVACAVAGIM SDANILINTA RVQAQRYTFM
101: YQEPMPVEQL VQSLCDTKQG YTQFGGLRPF GVSFLFAGWD KHHGFQLYMS DPSGNYGGWK AAAVGANNQA AQSILKQDYK DDATREEAVE LALKVLTKTM
201: DSTSLTSEKL ELAEVYLTPS KTVKYHVHSP ESLTKLLVKH GVTQPAAETS

Arabidopsis Description

PAC1Proteasome subunit alpha type-4-A [Source:UniProtKB/Swiss-Prot;Acc:O81148]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.