Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52371 | Canola | cytosol | 95.57 | 94.18 |
| CDY02422 | Canola | cytosol | 94.1 | 94.1 |
| CDX95156 | Canola | cytosol | 95.57 | 93.5 |
| AT5G42790.1 | Thale cress | cytosol | 94.83 | 92.45 |
| CDY47593 | Canola | cytosol | 92.25 | 91.58 |
| CDY17035 | Canola | cytosol | 92.25 | 91.58 |
| CDY21248 | Canola | cytosol | 45.39 | 87.86 |
| VIT_18s0001g12760.t01 | Wine grape | cytosol | 81.55 | 77.82 |
| KRH38836 | Soybean | cytosol, nucleus | 81.18 | 77.19 |
| KRH05846 | Soybean | cytosol, nucleus | 80.44 | 76.76 |
| KRH15173 | Soybean | cytosol, nucleus | 81.18 | 76.39 |
| PGSC0003DMT400009588 | Potato | cytosol | 77.12 | 76.28 |
| PGSC0003DMT400039976 | Potato | cytosol | 76.75 | 76.19 |
| GSMUA_Achr10P... | Banana | cytosol | 72.32 | 73.96 |
| Solyc04g080590.2.1 | Tomato | extracellular | 77.86 | 71.28 |
| Os02t0133800-01 | Rice | plastid | 68.63 | 68.89 |
| KRH20407 | Soybean | cytosol | 38.38 | 67.97 |
| Zm00001d015180_P001 | Maize | extracellular, mitochondrion, plasma membrane | 68.63 | 67.88 |
| EES04466 | Sorghum | cytosol | 67.16 | 67.41 |
| TraesCS6D01G084800.1 | Wheat | golgi | 68.27 | 64.24 |
| TraesCS6A01G097800.1 | Wheat | unclear | 68.27 | 64.24 |
| TraesCS6B01G126000.1 | Wheat | cytosol | 68.27 | 64.01 |
| HORVU6Hr1G017500.1 | Barley | cytosol | 67.53 | 63.54 |
| CDX68003 | Canola | cytosol, extracellular | 31.37 | 36.17 |
| CDY26894 | Canola | cytosol | 31.37 | 36.17 |
| CDX79306 | Canola | cytosol | 31.37 | 36.17 |
| CDY22253 | Canola | cytosol | 31.37 | 36.17 |
| CDY08208 | Canola | peroxisome | 31.0 | 34.43 |
| CDY51800 | Canola | peroxisome | 31.0 | 33.6 |
| CDY29009 | Canola | cytosol | 30.63 | 33.2 |
| CDX73737 | Canola | cytosol, extracellular | 30.63 | 33.2 |
| CDX77988 | Canola | cytosol, extracellular | 30.63 | 33.2 |
| CDX90655 | Canola | cytosol | 30.63 | 33.2 |
| CDY66240 | Canola | extracellular | 24.35 | 32.51 |
| CDY37382 | Canola | cytosol | 23.62 | 31.84 |
| CDY02493 | Canola | mitochondrion | 32.1 | 31.07 |
| CDY33398 | Canola | cytosol, extracellular | 28.04 | 30.89 |
| CDY18045 | Canola | cytosol | 28.04 | 30.89 |
| CDY19309 | Canola | extracellular | 22.88 | 30.85 |
| CDY39501 | Canola | cytosol, mitochondrion | 22.88 | 30.85 |
| CDY69258 | Canola | cytosol, mitochondrion | 23.62 | 30.77 |
| CDY25683 | Canola | cytosol, plastid | 32.1 | 30.74 |
| CDY50408 | Canola | cytosol, extracellular | 27.31 | 30.33 |
| CDY04473 | Canola | cytosol | 26.94 | 29.32 |
| CDY48190 | Canola | cytosol | 26.94 | 29.32 |
| CDX77059 | Canola | cytosol | 26.94 | 29.32 |
| CDX71476 | Canola | cytosol | 26.94 | 29.32 |
| CDX93103 | Canola | cytosol | 28.04 | 28.9 |
| CDX88517 | Canola | cytosol | 31.37 | 27.69 |
| CDX87400 | Canola | extracellular | 31.37 | 26.56 |
| CDX81411 | Canola | mitochondrion, plastid | 25.83 | 24.73 |
Protein Annotations
| MapMan:19.2.6.1.1.6 | Gene3D:3.60.20.10 | GO:A0A078C959 | EnsemblPlants:CDX71518 | ProteinID:CDX71518 | ProteinID:CDX71518.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005839 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 | GO:GO:0051603 | EnsemblPlantsGene:GSBRNA2T00148463001 |
| InterPro:IPR023332 | InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 |
| PFscan:PS51475 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF12 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_alpha1 | InterPro:Proteasome_asu_N |
| InterPro:Proteasome_sua/b | SMART:SM00948 | SUPFAM:SSF56235 | UniParc:UPI0004EC3664 | SEG:seg | : |
Description
BnaC04g17530D
Coordinates
chrLK031793:-:2180770..2182425
Molecular Weight (calculated)
29727.0 Da
IEP (calculated)
4.839
GRAVY (calculated)
-0.287
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS SSHVVLACVN KAQSELSSHQ KKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFA DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VSVLGVGEPF HFLDQEAIQK MIDTFEKVPE EEEGEAEVAA PAEQGGGADG LGDQDVAPME M
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFA DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VSVLGVGEPF HFLDQEAIQK MIDTFEKVPE EEEGEAEVAA PAEQGGGADG LGDQDVAPME M
001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM
Arabidopsis Description
PAF1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178UFX8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.