Factsheet for Zm00001d015180_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04466	Sorghum	cytosol	94.89	96.3
Os02t0133800-01	Rice	plastid	88.69	90.0
TraesCS6D01G084800.1	Wheat	golgi	88.32	84.03
TraesCS6B01G126000.1	Wheat	cytosol	88.32	83.74
TraesCS6A01G097800.1	Wheat	unclear	87.96	83.68
HORVU6Hr1G017500.1	Barley	cytosol	87.96	83.68
GSMUA_Achr10P...	Banana	cytosol	72.26	74.72
PGSC0003DMT400009588	Potato	cytosol	69.71	69.71
Bra014068.1-P	Field mustard	cytosol	67.88	68.89
CDX71518	Canola	cytosol	67.88	68.63
CDY21248	Canola	cytosol	35.04	68.57
PGSC0003DMT400039976	Potato	cytosol	68.25	68.5
VIT_18s0001g12760.t01	Wine grape	cytosol	70.8	68.31
CDY17035	Canola	cytosol	67.88	68.13
CDY47593	Canola	cytosol	67.88	68.13
AT5G42790.1	Thale cress	cytosol	68.98	67.99
CDY02422	Canola	cytosol	66.79	67.53
Bra035332.1-P	Field mustard	cytosol	66.79	67.53
CDY52371	Canola	cytosol	67.52	67.27
Bra027456.1-P	Field mustard	cytosol	67.52	67.27
AT1G47250.1	Thale cress	cytosol	67.88	67.15
CDX95156	Canola	cytosol	67.52	66.79
Solyc04g080590.2.1	Tomato	extracellular	70.07	64.86
KRH05846	Soybean	cytosol, nucleus	67.15	64.79
KRH38836	Soybean	cytosol, nucleus	67.15	64.56
KRH15173	Soybean	cytosol, nucleus	67.15	63.89
KRH20407	Soybean	cytosol	32.48	58.17
Zm00001d027688_P002	Maize	peroxisome	31.02	35.87
Zm00001d022629_P001	Maize	cytosol	30.29	33.33
Zm00001d053217_P001	Maize	cytosol, extracellular	29.93	32.93
Zm00001d006235_P001	Maize	cytosol, extracellular	29.93	32.93
Zm00001d017336_P007	Maize	cytosol	28.83	32.92
Zm00001d017338_P006	Maize	cytosol	28.83	32.92
Zm00001d027896_P001	Maize	cytosol, extracellular, mitochondrion	28.83	32.11
Zm00001d048271_P001	Maize	cytosol, extracellular	28.83	32.11
Zm00001d036319_P001	Maize	cytosol	27.74	30.4
Zm00001d012546_P002	Maize	cytosol	28.1	30.08
Zm00001d045194_P001	Maize	extracellular	27.37	30.0
Zm00001d043137_P004	Maize	cytosol	27.37	29.18
Zm00001d048403_P001	Maize	extracellular	31.02	29.01
Zm00001d022316_P001	Maize	cytosol	28.1	28.0
Zm00001d017340_P002	Maize	cytosol	18.61	26.84
Zm00001d034938_P001	Maize	cytosol	8.39	23.0
Zm00001d007038_P001	Maize	cytosol	28.47	20.1
Zm00001d022131_P001	Maize	mitochondrion	22.63	19.5
Zm00001d051211_P008	Maize	cytosol	28.47	16.6

Protein Annotations

EntrezGene:100282706	MapMan:19.2.6.1.1.6	Gene3D:3.60.20.10	ProteinID:AQK68227.1	UniProt:B6TAJ3	EMBL:BT065407
EMBL:EU962008	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475
PANTHER:PTHR11599	PANTHER:PTHR11599:SF12	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha1	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b
SMART:SM00948	SUPFAM:SSF56235	MEROPS:T01.976	UniParc:UPI000182C26C	EnsemblPlantsGene:Zm00001d015180	EnsemblPlants:Zm00001d015180_P001
EnsemblPlants:Zm00001d015180_T001	SEG:seg	:	:	:	:

Description

Proteasome subunit alpha type-1-B

Coordinates

chr5:+:78500834..78504838

Molecular Weight (calculated)

30017.4 Da

IEP (calculated)

4.936

GRAVY (calculated)

-0.293

Length

274 amino acids

Sequence
(BLAST)

001: MFRNQYDTDV TTWSPQGRLF QVEYAMEAVK QGSACVGLRS STHAVLAAVN KPASELSSYQ RKVFRVADHA GVALAGLTAD GRVLSRFLRN ECINHSFVYE
101: APLPVSRLAL KLADKAQVCT QRSWKRPYGV GLLVAGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT FLERRFQGYN DYTPEQLIKD ALSAIKETLQ
201: GEKLSSSNCT VAIVGRKEDG TIEPFEMIGA ARIQELIDSM EVAEEAPAEE ASSMQEEERG PEDAAAAAPA PMDI

Best Arabidopsis Sequence Match ( AT5G42790.1 )
(BLAST)

001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM

Arabidopsis Description

PAF1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178UFX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.