Factsheet for Zm00001d006235_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d003996_P001
Zm00001d010048_P004
Zm00001d013465_P001
Zm00001d025208_P002
Zm00001d033680_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51260.1	Zm00001d013465_P001	AT1G14920.1	21798944
AT3G51260.1	Zm00001d033680_P001	AT1G14920.1	21798944
AT3G51260.1	Zm00001d013465_P001	AT2G01570.1	21798944
AT3G51260.1	Zm00001d033680_P001	AT2G01570.1	21798944
AT3G51260.1	Zm00001d010048_P004	AT5G05410.1	18552202
AT3G51260.1	Zm00001d000402_P001	AT5G22310.1	21798944
AT3G51260.1	Zm00001d003996_P001	AT5G22310.1	21798944
AT3G51260.1	Zm00001d025208_P002	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97100	Sorghum	cytosol	98.8	98.8
Zm00001d022629_P001	Maize	cytosol	97.99	97.99
Os09t0538200-01	Rice	cytosol, plastid	96.39	96.39
Zm00001d053217_P001	Maize	cytosol, extracellular	95.98	95.98
GSMUA_Achr11P...	Banana	cytosol	91.16	91.16
GSMUA_Achr2P03470_001	Banana	cytosol	91.16	91.16
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	91.16	91.16
VIT_03s0038g02300.t01	Wine grape	cytosol	90.76	90.76
KRH69759	Soybean	endoplasmic reticulum, nucleus	90.76	90.76
VIT_04s0023g03690.t01	Wine grape	cytosol	90.36	90.36
Solyc01g111450.2.1	Tomato	plastid	89.56	89.56
PGSC0003DMT400015849	Potato	cytosol	89.56	89.56
AT5G66140.1	Thale cress	cytosol	89.56	89.2
AT3G51260.1	Thale cress	cytosol	88.75	88.4
Bra012861.1-P	Field mustard	cytosol	88.75	88.4
CDX90655	Canola	cytosol	88.35	88.0
CDY29009	Canola	cytosol	88.35	88.0
CDX77988	Canola	cytosol, extracellular	87.95	87.6
Bra036824.1-P	Field mustard	cytosol	87.95	87.6
CDX73737	Canola	cytosol, extracellular	87.55	87.2
CDX81411	Canola	mitochondrion, plastid	68.27	60.07
Zm00001d034938_P001	Maize	cytosol	19.28	48.0
Zm00001d027688_P002	Maize	peroxisome	36.95	38.82
Zm00001d017336_P007	Maize	cytosol	34.94	36.25
Zm00001d017338_P006	Maize	cytosol	34.94	36.25
Zm00001d048271_P001	Maize	cytosol, extracellular	35.34	35.77
Zm00001d027896_P001	Maize	cytosol, extracellular, mitochondrion	35.34	35.77
Zm00001d045194_P001	Maize	extracellular	34.94	34.8
Zm00001d036319_P001	Maize	cytosol	34.94	34.8
Zm00001d048403_P001	Maize	extracellular	36.95	31.4
Zm00001d015180_P001	Maize	extracellular, mitochondrion, plasma membrane	32.93	29.93
Zm00001d017340_P002	Maize	cytosol	22.49	29.47
Zm00001d012546_P002	Maize	cytosol	30.12	29.3
Zm00001d043137_P004	Maize	cytosol	29.72	28.79
Zm00001d022316_P001	Maize	cytosol	30.12	27.27
Zm00001d022131_P001	Maize	mitochondrion	27.71	21.7
Zm00001d007038_P001	Maize	cytosol	30.12	19.33
Zm00001d051211_P008	Maize	cytosol	35.34	18.72

Protein Annotations

EntrezGene:100037815	MapMan:19.2.6.1.1.4	Gene3D:3.60.20.10	UniProt:A3FMB9	EMBL:BT037934	ncoils:Coil
EMBL:EF406364	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	ProteinID:ONM23145.1	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF106	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b
SMART:SM00948	SUPFAM:SSF56235	MEROPS:T01.974	UniParc:UPI0000F23792	EnsemblPlantsGene:Zm00001d006235	EnsemblPlants:Zm00001d006235_P001
EnsemblPlants:Zm00001d006235_T001	SEG:seg	:	:	:	:

Description

Proteasome subunit alpha type

Coordinates

chr2:+:202495264..202498539

Molecular Weight (calculated)

27229.4 Da

IEP (calculated)

8.423

GRAVY (calculated)

-0.355

Length

249 amino acids

Sequence
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLGVEKKS TPKLQDSRSV RKIACLDTHI ALACAGLKAD ARVLINRARV ECQSHRLTVE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY TDKPALYQTD PSGTFSAWKA NATGRNSNSM REFLEKNYKE TSGKETIKLA IRALLEVVES
201: GGKNIEVAVM TKKDGLRELE ESEIDEYVAE IEAEKAAAEA AKKGAPKNA

Best Arabidopsis Sequence Match ( AT5G66140.1 )
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY SRLPSLYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SSGQETIKLA IRALLEVVES
201: GGKNIEVAVM TREETGLRQL EEAEIDAIVA KIEAEKAAAE AAKKGPPKET

Arabidopsis Description

PAD2Proteasome subunit alpha type-7-B [Source:UniProtKB/Swiss-Prot;Acc:O24616]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.