CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93592
EES11990
KXG21735
KXG30263

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51260.1	EER93592	AT1G14920.1	21798944
AT3G51260.1	EER93592	AT2G01570.1	21798944
AT3G51260.1	KXG21735	AT5G05410.1	18552202
AT3G51260.1	EES11990	AT5G22310.1	21798944
AT3G51260.1	KXG30263	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022629_P001	Maize	cytosol	99.2	99.2
Zm00001d006235_P001	Maize	cytosol, extracellular	98.8	98.8
Os09t0538200-01	Rice	cytosol, plastid	97.19	97.19
EES15231	Sorghum	cytosol	96.39	96.39
GSMUA_Achr2P03470_001	Banana	cytosol	92.37	92.37
GSMUA_Achr11P...	Banana	cytosol	92.37	92.37
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	91.97	91.97
VIT_04s0023g03690.t01	Wine grape	cytosol	91.57	91.57
VIT_03s0038g02300.t01	Wine grape	cytosol	91.57	91.57
KRH69759	Soybean	endoplasmic reticulum, nucleus	91.57	91.57
Solyc01g111450.2.1	Tomato	plastid	90.36	90.36
PGSC0003DMT400015849	Potato	cytosol	90.36	90.36
AT5G66140.1	Thale cress	cytosol	90.36	90.0
Bra012861.1-P	Field mustard	cytosol	89.56	89.2
AT3G51260.1	Thale cress	cytosol	89.16	88.8
CDY29009	Canola	cytosol	89.16	88.8
CDX90655	Canola	cytosol	89.16	88.8
Bra036824.1-P	Field mustard	cytosol	88.75	88.4
CDX77988	Canola	cytosol, extracellular	88.75	88.4
CDX73737	Canola	cytosol, extracellular	88.35	88.0
CDX81411	Canola	mitochondrion, plastid	67.87	59.72
EES10115	Sorghum	peroxisome	37.35	39.24
OQU93221	Sorghum	cytosol	37.35	39.24
EER94765	Sorghum	cytosol	35.74	37.87
EES05472	Sorghum	cytosol	35.34	37.45
EER92751	Sorghum	cytosol	35.74	36.18
OQU75904	Sorghum	cytosol	34.54	34.4
EES01630	Sorghum	cytosol	25.7	31.37
KXG36677	Sorghum	plastid	33.33	30.29
EER97635	Sorghum	cytosol	29.72	29.72
EES04466	Sorghum	cytosol	31.73	29.26

Protein Annotations

MapMan:19.2.6.1.1.4	Gene3D:3.60.20.10	EntrezGene:8070910	UniProt:C5X6V1	ncoils:Coil	EnsemblPlants:EER97100
ProteinID:EER97100	ProteinID:EER97100.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF106	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b
SMART:SM00948	EnsemblPlantsGene:SORBI_3002G279000	SUPFAM:SSF56235	unigene:Sbi.18678	UniParc:UPI0001A8398D	RefSeq:XP_002460579.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:66085580..66089164

Molecular Weight (calculated)

27244.5 Da

IEP (calculated)

8.034

GRAVY (calculated)

-0.355

Length

249 amino acids

Sequence
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLGVEKKS TPKLQDSRSV RKIACLDTHI ALACAGLKAD ARVLINRARV ECQSHRLTVE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY TDKPALYQTD PSGTFSAWKA NATGRNSNSM REFLEKNYKE TSGKETIKLA IRALLEVVES
201: GGKNIEVAVM TKKDGLRELE EAEIDEYVAE IEAEKAAAEA AKKGAPKDT

Best Arabidopsis Sequence Match ( AT5G66140.1 )
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY SRLPSLYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SSGQETIKLA IRALLEVVES
201: GGKNIEVAVM TREETGLRQL EEAEIDAIVA KIEAEKAAAE AAKKGPPKET

Arabidopsis Description

PAD2Proteasome subunit alpha type-7-B [Source:UniProtKB/Swiss-Prot;Acc:O24616]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.