CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25284
KRH30384
KRH42544
KRH58636

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51260.1	KRH42544	AT1G14920.1	21798944
AT3G51260.1	KRH58636	AT1G14920.1	21798944
AT3G51260.1	KRH42544	AT2G01570.1	21798944
AT3G51260.1	KRH58636	AT2G01570.1	21798944
AT3G51260.1	KRH25284	AT5G22310.1	21798944
AT3G51260.1	KRH30384	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	98.39	98.39
VIT_03s0038g02300.t01	Wine grape	cytosol	95.18	95.18
PGSC0003DMT400015849	Potato	cytosol	94.78	94.78
Solyc01g111450.2.1	Tomato	plastid	94.78	94.78
VIT_04s0023g03690.t01	Wine grape	cytosol	94.38	94.38
GSMUA_Achr2P03470_001	Banana	cytosol	93.57	93.57
GSMUA_Achr11P...	Banana	cytosol	93.57	93.57
AT5G66140.1	Thale cress	cytosol	92.37	92.0
CDY29009	Canola	cytosol	91.97	91.6
CDX77988	Canola	cytosol, extracellular	91.97	91.6
Bra036824.1-P	Field mustard	cytosol	91.97	91.6
EER97100	Sorghum	cytosol	91.57	91.57
CDX73737	Canola	cytosol, extracellular	91.57	91.2
Bra012861.1-P	Field mustard	cytosol	91.57	91.2
Zm00001d022629_P001	Maize	cytosol	91.16	91.16
Os08t0548900-01	Rice	plastid	91.16	91.16
CDX90655	Canola	cytosol	91.16	90.8
AT3G51260.1	Thale cress	cytosol	91.16	90.8
Zm00001d006235_P001	Maize	cytosol, extracellular	90.76	90.76
TraesCS5B01G329400.1	Wheat	cytosol	90.76	90.76
TraesCS5A01G329300.1	Wheat	cytosol	90.76	90.76
Zm00001d053217_P001	Maize	cytosol, extracellular	90.76	90.76
Os09t0538200-01	Rice	cytosol, plastid	90.76	90.76
HORVU5Hr1G083350.1	Barley	cytosol	90.76	90.76
TraesCS7D01G272300.1	Wheat	cytosol	89.96	89.96
TraesCS7B01G170000.1	Wheat	cytosol, golgi, plastid, unclear	89.96	89.96
TraesCS7A01G272000.1	Wheat	cytosol	89.96	89.96
EES15231	Sorghum	cytosol	89.56	89.56
HORVU7Hr1G057390.2	Barley	cytosol, nucleus, plastid	89.16	78.17
CDX81411	Canola	mitochondrion, plastid	68.27	60.07
KRH57899	Soybean	cytosol	25.7	41.83
KRH36037	Soybean	endoplasmic reticulum, nucleus	37.35	39.24
KRG90710	Soybean	peroxisome	37.35	39.24
KRH69234	Soybean	endoplasmic reticulum	37.35	39.24
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	36.95	39.15
KRH65961	Soybean	cytosol	36.95	39.15
KRH31817	Soybean	cytosol	36.95	38.82
KRH13728	Soybean	cytosol	36.55	38.72
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	36.55	38.72
KRH55422	Soybean	cytosol, endoplasmic reticulum	35.34	35.77
KRH26034	Soybean	nucleus	35.34	35.77
KRH00322	Soybean	cytosol	35.34	35.2
KRH76017	Soybean	cytosol	34.94	34.8
KRH65617	Soybean	nucleus	34.94	34.8
KRH49455	Soybean	endoplasmic reticulum, nucleus	34.94	34.8
KRH05846	Soybean	cytosol, nucleus	33.33	29.23
KRH38836	Soybean	cytosol, nucleus	33.33	29.12
KRH15173	Soybean	cytosol, nucleus	33.33	28.82
KRG94269	Soybean	cytosol	28.11	28.11
KRH57704	Soybean	cytosol, endoplasmic reticulum	26.51	25.29
KRH20407	Soybean	cytosol	13.65	22.22

Protein Annotations

EntrezGene:100808731	MapMan:19.2.6.1.1.4	Gene3D:3.60.20.10	UniProt:A0A0R4J2M8	EMBL:ACUP02000729	ncoils:Coil
EnsemblPlantsGene:GLYMA_02G046400	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332
InterPro:IPR029055	EnsemblPlants:KRH69759	ProteinID:KRH69759	ProteinID:KRH69759.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF106	InterPro:Proteasome_alpha-type
InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0001890A5C	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:4256614..4260141

Molecular Weight (calculated)

27103.2 Da

IEP (calculated)

7.617

GRAVY (calculated)

-0.305

Length

249 amino acids

Sequence
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD NVVLGVEKKS TAKLQDSRSV RKIVNLDNHI ALACAGLKAD ARVLINRARV ECQSHRLTVE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY TGSPSLYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKD TSGQETVKLA IRALLEVVES
201: GGKNIEVAVM TKEHGLHQLE EAEIDAIVAE IEAEKAAAEA AKKAPPKET

Best Arabidopsis Sequence Match ( AT5G66140.1 )
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY SRLPSLYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SSGQETIKLA IRALLEVVES
201: GGKNIEVAVM TREETGLRQL EEAEIDAIVA KIEAEKAAAE AAKKGPPKET

Arabidopsis Description

PAD2Proteasome subunit alpha type-7-B [Source:UniProtKB/Swiss-Prot;Acc:O24616]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.