CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14247
KRH73888

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05840.1	KRH14247	AT5G40580.1	21798944
AT2G05840.1	KRH73888	AT5G40580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26034	Soybean	nucleus	99.19	99.19
GSMUA_Achr10P...	Banana	cytosol	91.06	91.06
VIT_09s0002g00980.t01	Wine grape	cytosol	91.06	91.06
Solyc12g009140.1.1	Tomato	extracellular	91.06	91.06
PGSC0003DMT400007520	Potato	cytosol, extracellular	91.06	91.06
GSMUA_Achr6P11610_001	Banana	cytosol	89.02	89.02
Bra015170.1-P	Field mustard	cytosol	88.21	88.21
AT2G05840.1	Thale cress	cytosol	88.21	88.21
CDY18045	Canola	cytosol	88.21	88.21
CDY33398	Canola	cytosol, extracellular	88.21	88.21
CDY50408	Canola	cytosol, extracellular	87.4	88.11
AT5G35590.1	Thale cress	cytosol	87.8	87.8
Bra013157.1-P	Field mustard	cytosol	87.8	87.8
Os03t0180400-01	Rice	cytosol	86.99	86.99
Zm00001d048271_P001	Maize	cytosol, extracellular	86.59	86.59
Zm00001d027896_P001	Maize	cytosol, extracellular, mitochondrion	86.59	86.59
EER92751	Sorghum	cytosol	85.77	85.77
TraesCS4D01G295500.1	Wheat	cytosol, golgi, plastid, unclear	84.55	84.55
TraesCS4A01G008300.1	Wheat	cytosol, golgi, plastid, unclear	84.55	84.55
CDX93103	Canola	cytosol	88.21	82.51
HORVU4Hr1G076770.2	Barley	cytosol	84.96	74.11
GSMUA_Achr3P02110_001	Banana	cytosol	36.18	64.96
KXG36677	Sorghum	plastid	63.41	56.93
TraesCS2A01G170100.1	Wheat	mitochondrion	55.69	51.12
TraesCS2D01G177600.1	Wheat	mitochondrion	55.28	50.75
Os07t0614100-01	Rice	cytosol	51.22	49.8
TraesCS2B01G196400.1	Wheat	mitochondrion	54.88	46.39
Zm00001d022131_P001	Maize	mitochondrion	55.69	43.08
KRH65961	Soybean	cytosol	34.96	36.6
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	34.55	36.17
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	34.55	36.17
KRH13728	Soybean	cytosol	34.15	35.74
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	36.18	35.74
KRH69759	Soybean	endoplasmic reticulum, nucleus	35.77	35.34
KRH76017	Soybean	cytosol	33.33	32.8
KRH65617	Soybean	nucleus	33.33	32.8
KRH49455	Soybean	endoplasmic reticulum, nucleus	33.33	32.8
KRH00322	Soybean	cytosol	33.33	32.8
KRH69234	Soybean	endoplasmic reticulum	30.08	31.22
KRG90710	Soybean	peroxisome	29.67	30.8
KRH36037	Soybean	endoplasmic reticulum, nucleus	29.67	30.8
KRH31817	Soybean	cytosol	29.67	30.8
KRG94269	Soybean	cytosol	30.08	29.72
KRH05846	Soybean	cytosol, nucleus	31.71	27.46
KRH38836	Soybean	cytosol, nucleus	31.71	27.37
KRH15173	Soybean	cytosol, nucleus	31.71	27.08
KRH57704	Soybean	cytosol, endoplasmic reticulum	28.46	26.82
KRH57899	Soybean	cytosol	15.45	24.84
KRH20407	Soybean	cytosol	13.41	21.57

Protein Annotations

MapMan:19.2.6.1.1.1	Gene3D:3.60.20.10	EntrezGene:732640	UniProt:A0A0R4J3L5	EMBL:ACUP02004003	EnsemblPlantsGene:GLYMA_06G254200
GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055
EnsemblPlants:KRH55422	ProteinID:KRH55422	ProteinID:KRH55422.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF11	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha6	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0001B83786	:

Description

hypothetical protein

Coordinates

chr6:-:43254371..43259534

Molecular Weight (calculated)

27385.6 Da

IEP (calculated)

5.658

GRAVY (calculated)

-0.293

Length

246 amino acids

Sequence
(BLAST)

001: MSRGSGGGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSICV VTQKKVPDKL LDNTSVTHLF PITKYLGLLA TGMTADARTL VQQARNEAAE
101: FRFTYGYEMP VDVLAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDDEYGPQ LYKCDPAGHY FGHKATSAGL KDQEAINFLE KKMKNDPSFT YEETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RKDNPEFRVL TTDEIDEHLT AISERD

Best Arabidopsis Sequence Match ( AT5G35590.1 )
(BLAST)

001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKTAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVTHLF PITKYIGLVA TGITADARSL VQQARNQAAE
101: FRFTYGYEMP VDILAKWIAD KSQVYTQHAY MRPLGVVAMV MGVDEENGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPSFT FDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RAENPEFRAL TTEEIEEHLT AISERD

Arabidopsis Description

PAA1Proteasome subunit alpha type-6-A [Source:UniProtKB/Swiss-Prot;Acc:O81146]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.