Factsheet for TraesCS2A01G170100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G122700.1
TraesCS1B01G141900.1
TraesCS1D01G123600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05840.1	TraesCS1A01G122700.1	AT5G40580.1	21798944
AT2G05840.1	TraesCS1B01G141900.1	AT5G40580.1	21798944
AT2G05840.1	TraesCS1D01G123600.1	AT5G40580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G177600.1	Wheat	mitochondrion	95.9	95.9
TraesCS2B01G196400.1	Wheat	mitochondrion	95.9	88.32
GSMUA_Achr10P...	Banana	cytosol	51.87	56.5
Solyc12g009140.1.1	Tomato	extracellular	51.49	56.1
PGSC0003DMT400007520	Potato	cytosol, extracellular	51.49	56.1
KRH55422	Soybean	cytosol, endoplasmic reticulum	51.12	55.69
KRH26034	Soybean	nucleus	51.12	55.69
VIT_09s0002g00980.t01	Wine grape	cytosol	50.75	55.28
GSMUA_Achr6P11610_001	Banana	cytosol	50.75	55.28
CDY50408	Canola	cytosol, extracellular	49.63	54.51
TraesCS4A01G008300.1	Wheat	cytosol, golgi, plastid, unclear	50.0	54.47
CDY33398	Canola	cytosol, extracellular	50.0	54.47
CDY18045	Canola	cytosol	50.0	54.47
Bra015170.1-P	Field mustard	cytosol	50.0	54.47
Bra013157.1-P	Field mustard	cytosol	50.0	54.47
AT2G05840.1	Thale cress	cytosol	50.0	54.47
Os07t0614100-01	Rice	cytosol	51.12	54.15
AT5G35590.1	Thale cress	cytosol	49.25	53.66
CDX93103	Canola	cytosol	49.63	50.57
KXG36677	Sorghum	plastid	50.37	49.27
GSMUA_Achr3P02110_001	Banana	cytosol	22.01	43.07
Zm00001d022131_P001	Maize	mitochondrion	45.52	38.36
TraesCS5A01G329300.1	Wheat	cytosol	26.12	28.11
TraesCS7A01G272000.1	Wheat	cytosol	25.75	27.71
TraesCS4A01G167300.1	Wheat	peroxisome	24.25	27.43
TraesCS2A01G189400.1	Wheat	cytosol	23.13	26.38
TraesCS3A01G285600.1	Wheat	cytosol	23.13	26.38
TraesCS7A01G130500.1	Wheat	plastid	23.51	25.2
TraesCS1A01G308400.1	Wheat	cytosol	22.76	24.5
TraesCS6A01G097800.1	Wheat	unclear	26.12	24.31
TraesCS5A01G287400.1	Wheat	cytosol, golgi, unclear	22.39	24.1
TraesCS5A01G109000.1	Wheat	peroxisome	16.04	22.16

Protein Annotations

MapMan:19.2.6.1.1.1	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF54	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:TraesCS2A01G170100	EnsemblPlants:TraesCS2A01G170100.1	SEG:seg

Description

No Description!

Coordinates

chr2A:+:125247871..125250911

Molecular Weight (calculated)

29515.3 Da

IEP (calculated)

8.676

GRAVY (calculated)

-0.386

Length

268 amino acids

Sequence
(BLAST)

001: MSGRVGESSS RRRRTAAKPP RYDRSITVFS PEGRVFQVDY ARNSVKLEGI TSVAVRGADS VCVITQRTKA PADPLLDTAD PAFMHLFQIT ERLGMLATGM
101: PADGRALAQQ ARNEAAGFRH KWGYEMPPKM LAQWLGDRAQ VRTQHAGMRP YRVVATVVGI DEEKGTPELF TCDPAGQVLG HKATSVGLKD QEAIEFLEEA
201: MAGNSSLSFQ ETMEMAVSAL RHVLEDNSQG HDIEVGVVRK NYPIFRTVLR RIYKNPLAGQ SILDGEGQ

Best Arabidopsis Sequence Match ( AT2G05840.1 )
(BLAST)

001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD

Arabidopsis Description

PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.