Factsheet for GSMUA_Achr6P11610_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P03760_001
GSMUA_Achr9P20290_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05840.1	GSMUA_Achr7P03760_001	AT5G40580.1	21798944
AT2G05840.1	GSMUA_Achr9P20290_001	AT5G40580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	96.75	96.75
Solyc12g009140.1.1	Tomato	extracellular	92.28	92.28
PGSC0003DMT400007520	Potato	cytosol, extracellular	92.28	92.28
Os03t0180400-01	Rice	cytosol	91.46	91.46
Zm00001d048271_P001	Maize	cytosol, extracellular	90.65	90.65
Zm00001d027896_P001	Maize	cytosol, extracellular, mitochondrion	90.65	90.65
VIT_09s0002g00980.t01	Wine grape	cytosol	90.65	90.65
EER92751	Sorghum	cytosol	90.65	90.65
TraesCS4D01G295500.1	Wheat	cytosol, golgi, plastid, unclear	89.84	89.84
KRH26034	Soybean	nucleus	89.84	89.84
TraesCS4A01G008300.1	Wheat	cytosol, golgi, plastid, unclear	89.02	89.02
KRH55422	Soybean	cytosol, endoplasmic reticulum	89.02	89.02
AT2G05840.1	Thale cress	cytosol	86.99	86.99
AT5G35590.1	Thale cress	cytosol	85.37	85.37
Bra013157.1-P	Field mustard	cytosol	85.37	85.37
Bra015170.1-P	Field mustard	cytosol	85.37	85.37
CDY18045	Canola	cytosol	85.37	85.37
CDY33398	Canola	cytosol, extracellular	85.37	85.37
CDY50408	Canola	cytosol, extracellular	84.55	85.25
CDX93103	Canola	cytosol	84.96	79.47
HORVU4Hr1G076770.2	Barley	cytosol	89.43	78.01
GSMUA_Achr3P02110_001	Banana	cytosol	37.4	67.15
KXG36677	Sorghum	plastid	64.23	57.66
Os07t0614100-01	Rice	cytosol	54.47	52.96
TraesCS2D01G177600.1	Wheat	mitochondrion	55.69	51.12
TraesCS2A01G170100.1	Wheat	mitochondrion	55.28	50.75
TraesCS2B01G196400.1	Wheat	mitochondrion	54.47	46.05
Zm00001d022131_P001	Maize	mitochondrion	56.91	44.03
GSMUA_Achr2P03470_001	Banana	cytosol	36.99	36.55
GSMUA_Achr11P...	Banana	cytosol	36.59	36.14
GSMUA_Achr7P21280_001	Banana	cytosol	32.52	34.93
GSMUA_Achr8P13980_001	Banana	cytosol	32.93	34.47
GSMUA_Achr5P19360_001	Banana	cytosol	32.93	34.47
GSMUA_Achr6P02000_001	Banana	cytosol	24.39	30.93
GSMUA_Achr10P...	Banana	peroxisome	29.67	30.8
GSMUA_Achr11P...	Banana	peroxisome	29.67	30.8
GSMUA_Achr4P00300_001	Banana	cytosol	33.33	30.71
GSMUA_Achr10P...	Banana	cytosol	30.89	28.68
GSMUA_Achr4P10040_001	Banana	cytosol	28.05	27.71
GSMUA_Achr8P23960_001	Banana	cytosol	27.24	26.91
GSMUA_Achr6P10850_001	Banana	mitochondrion	27.64	22.3

Protein Annotations

MapMan:19.2.6.1.1.1	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
EnsemblPlantsGene:GSMUA_Achr6G11610_001	EnsemblPlants:GSMUA_Achr6P11610_001	EnsemblPlants:GSMUA_Achr6T11610_001	InterPro:IPR023332	InterPro:IPR029055	UniProt:M0T659
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599
PANTHER:PTHR11599:SF54	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha6	SMART:SM00948
SUPFAM:SSF56235	UniParc:UPI0002966D36	:	:	:	:

Description

Proteasome subunit alpha type-6 [Source:GMGC_GENE;Acc:GSMUA_Achr6G11610_001]

Coordinates

chr6:-:7688504..7693689

Molecular Weight (calculated)

27437.9 Da

IEP (calculated)

6.258

GRAVY (calculated)

-0.221

Length

246 amino acids

Sequence
(BLAST)

001: MSRGTGAGYD RHITIFSPEG RLYQVEYAFK AVKASGITSI GVRGKDSVCV VTQKKVPDKL LDQTSVTHLF PITKYLGLLA TGITADARSL VQQARNEAAE
101: FRFKWGYEMP VDVLAKWIAD KSQIYTQHAY MRPLGIVAMI LGIDEEKGPQ LFKCDPAGHF FGHKATSAGL KEQEAINFLE KKMKNDPAFS YEETVQIAIS
201: ALQSVLQEDF KATEIEVGVV RKEDTVFRVL STEEIDEHLT AISERD

Best Arabidopsis Sequence Match ( AT2G05840.1 )
(BLAST)

001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD

Arabidopsis Description

PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.