Factsheet for Solyc12g009140.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g024420.2.1
Solyc05g013820.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05840.1	Solyc04g024420.2.1	AT5G40580.1	21798944
AT2G05840.1	Solyc05g013820.2.1	AT5G40580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007520	Potato	cytosol, extracellular	100.0	100.0
GSMUA_Achr10P...	Banana	cytosol	92.28	92.28
GSMUA_Achr6P11610_001	Banana	cytosol	92.28	92.28
KRH26034	Soybean	nucleus	91.87	91.87
VIT_09s0002g00980.t01	Wine grape	cytosol	91.46	91.46
KRH55422	Soybean	cytosol, endoplasmic reticulum	91.06	91.06
AT2G05840.1	Thale cress	cytosol	89.84	89.84
Bra015170.1-P	Field mustard	cytosol	89.02	89.02
CDY18045	Canola	cytosol	89.02	89.02
CDY33398	Canola	cytosol, extracellular	89.02	89.02
CDY50408	Canola	cytosol, extracellular	87.8	88.52
Bra013157.1-P	Field mustard	cytosol	88.21	88.21
Os03t0180400-01	Rice	cytosol	87.8	87.8
Zm00001d048271_P001	Maize	cytosol, extracellular	86.99	86.99
EER92751	Sorghum	cytosol	86.99	86.99
Zm00001d027896_P001	Maize	cytosol, extracellular, mitochondrion	86.99	86.99
TraesCS4D01G295500.1	Wheat	cytosol, golgi, plastid, unclear	86.59	86.59
AT5G35590.1	Thale cress	cytosol	86.18	86.18
TraesCS4A01G008300.1	Wheat	cytosol, golgi, plastid, unclear	85.77	85.77
CDX93103	Canola	cytosol	87.8	82.13
HORVU4Hr1G076770.2	Barley	cytosol	86.18	75.18
GSMUA_Achr3P02110_001	Banana	cytosol	35.77	64.23
KXG36677	Sorghum	plastid	63.82	57.3
Os07t0614100-01	Rice	cytosol	53.66	52.17
TraesCS2D01G177600.1	Wheat	mitochondrion	56.5	51.87
TraesCS2A01G170100.1	Wheat	mitochondrion	56.1	51.49
TraesCS2B01G196400.1	Wheat	mitochondrion	55.28	46.74
Zm00001d022131_P001	Maize	mitochondrion	57.32	44.34
Solyc01g111450.2.1	Tomato	plastid	36.18	35.74
Solyc10g008010.2.1	Tomato	extracellular, plastid	33.33	34.89
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	32.52	34.04
Solyc02g070510.2.1	Tomato	nucleus	30.49	31.65
Solyc02g081700.1.1	Tomato	extracellular	31.71	31.45
Solyc08g016510.2.1	Tomato	extracellular	30.08	31.22
Solyc01g111460.2.1	Tomato	cytosol	14.63	28.12
Solyc04g080590.2.1	Tomato	extracellular	33.33	27.7
Solyc10g081130.1.1	Tomato	extracellular, plastid	27.24	26.91
Solyc10g077030.1.1	Tomato	extracellular	27.24	26.91

Protein Annotations

MapMan:19.2.6.1.1.1	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603
InterPro:IPR023332	InterPro:IPR029055	UniProt:K4DC02	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF54	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha6	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc12g009140.1	EnsemblPlants:Solyc12g009140.1.1
MEROPS:T01.971	UniParc:UPI000276982F	:	:	:	:

Description

Proteasome subunit alpha type-6-B [Source:Projected from Arabidopsis thaliana (AT2G05840) UniProtKB/Swiss-Prot;Acc:O81147]

Coordinates

chr12:-:2453127..2457231

Molecular Weight (calculated)

27319.6 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.291

Length

246 amino acids

Sequence
(BLAST)

001: MSRGSGGGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQTSVSHLF PITKYLGLLA TGMTADARTL VQQARNEAAE
101: FRFKYGYEMP ADVLSKWIAD KSQVYTQHAY MRPLGVVAMI LGIDEEKGPQ LFKCDPAGHF FGHKATSAGS KEQEAINFLE KKMKNNPAFS YEETVQTTIS
201: ALQSVLQEDF KASEIEVGVV RKEDPVFRVL TTEEIDEHLT AISERD

Best Arabidopsis Sequence Match ( AT2G05840.1 )
(BLAST)

001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD

Arabidopsis Description

PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.