Factsheet for Solyc10g081130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

cytosol 5
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072226	Potato	cytosol	99.2	99.2
Solyc10g077030.1.1	Tomato	extracellular	97.19	97.19
VIT_08s0040g00410.t01	Wine grape	cytosol	94.38	94.38
GSMUA_Achr8P23960_001	Banana	cytosol	92.37	92.37
KRG94269	Soybean	cytosol	91.97	91.97
GSMUA_Achr4P10040_001	Banana	cytosol	91.57	91.57
Bra034316.1-P	Field mustard	cytosol	89.56	89.56
CDY48190	Canola	cytosol	89.56	89.56
CDY04473	Canola	cytosol	89.56	89.56
Os01t0811100-01	Rice	cytosol	89.16	89.16
CDX71476	Canola	cytosol	89.16	89.16
CDX77059	Canola	cytosol	88.75	88.75
EES01630	Sorghum	cytosol	72.69	88.73
EER97635	Sorghum	cytosol	87.95	87.95
Os05t0490800-01	Rice	cytosol, plasma membrane	86.75	86.75
TraesCS1B01G319100.1	Wheat	cytosol	86.75	86.75
TraesCS1D01G307800.1	Wheat	cytosol	86.75	86.75
TraesCS5A01G287400.1	Wheat	cytosol, golgi, unclear	86.75	86.75
TraesCS5B01G286900.1	Wheat	cytosol	86.75	86.75
TraesCS5D01G295300.1	Wheat	cytosol	86.75	86.75
HORVU1Hr1G068490.1	Barley	cytosol	86.35	86.35
HORVU0Hr1G001180.1	Barley	cytosol	86.35	86.35
TraesCS1A01G308400.1	Wheat	cytosol	86.35	86.35
Zm00001d012546_P002	Maize	cytosol	87.95	85.55
Zm00001d043137_P004	Maize	cytosol	87.15	84.44
KRH57704	Soybean	cytosol, endoplasmic reticulum	87.15	83.14
Zm00001d022316_P001	Maize	cytosol	87.95	79.64
HORVU5Hr1G076600.1	Barley	plastid	71.89	69.11
AT2G27020.2	Thale cress	cytoskeleton, cytosol, nucleus	89.56	63.53
Zm00001d007038_P001	Maize	cytosol	88.35	56.7
Solyc10g008010.2.1	Tomato	extracellular, plastid	30.52	32.34
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	29.72	31.49
Solyc08g016510.2.1	Tomato	extracellular	28.11	29.54
Solyc02g070510.2.1	Tomato	nucleus	27.71	29.11
Solyc02g081700.1.1	Tomato	extracellular	28.92	29.03
Solyc01g111450.2.1	Tomato	plastid	28.92	28.92
Solyc12g009140.1.1	Tomato	extracellular	26.91	27.24
Solyc04g080590.2.1	Tomato	extracellular	29.32	24.66
Solyc01g111460.2.1	Tomato	cytosol	12.05	23.44

Protein Annotations

MapMan:19.2.6.1.1.7	Gene3D:3.60.20.10	ncoils:Coil	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	UniProt:K4D300	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF103	InterPro:Proteasome_alpha-type
InterPro:Proteasome_alpha3	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc10g081130.1
EnsemblPlants:Solyc10g081130.1.1	UniParc:UPI000276978A	SEG:seg	:	:	:

Description

Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:K4D300]

Coordinates

chr10:+:62273210..62277288

Molecular Weight (calculated)

27140.5 Da

IEP (calculated)

6.401

GRAVY (calculated)

-0.201

Length

249 amino acids

Sequence
(BLAST)

001: MSSIGTGYDL SVTTFSPDGR VFQIEYAGKA VDNSGTVVGI KCKDGIVLGV EKLIASKMML PGSNRRIHSV HRHSGMAVAG LAADGRQIVA RAKSEATSFE
101: SVYGEPIPVK ELAERVASYV HLCTLYWWLR PFGSGVILGG YDRDGPQLYM VEPSGVSHRY FGAAIGKGRQ AAKTEIEKLK LSEMTCRQGV IEVAKIIYGV
201: HDEAKDKAFE LEMSWVCDES NRQHQKVPAD LLEEAKDAAK AALEEMDAD

Best Arabidopsis Sequence Match ( AT2G27020.2 )
(BLAST)

001: MWLIIQNYTK EENHLKIFTI PLKDYQRMGQ IIILIKPVNN RIDPPDKTTR IVLISNPESD GAPKIWLVSG LRTKKTPFFD LSLNHSTKKK SEKSQRKKKS
101: RKMSSIGTGY DLSVTTFSPD GRVFQIEYAA KAVDNSGTVV GIKCKDGIVM GVEKLIASKM MLPGSNRRIH SVHRHAGMAV AGLAADGRQI VARAKSEARS
201: YESVYGDAVP VKELSERVAS YVHLCTLYWW LRPFGCGVIL GGYDRDGPQL YMIEPSGISY RYFGAAIGKG KQAAKTEIEK LNLSEMTCKE GVIEVAKIIY
301: KLHDEAKDKA FELEMSWICE ESKREHQKVP DDLLEEAKTA AKTALEEMDA D

Arabidopsis Description

PAG120S proteasome alpha subunit G1 [Source:TAIR;Acc:AT2G27020]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.