Factsheet for VIT_08s0040g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072226	Potato	cytosol	95.18	95.18
Solyc10g077030.1.1	Tomato	extracellular	94.78	94.78
Solyc10g081130.1.1	Tomato	extracellular, plastid	94.38	94.38
PGSC0003DMT400018521	Potato	cytosol	94.38	94.38
KRG94269	Soybean	cytosol	93.17	93.17
GSMUA_Achr4P10040_001	Banana	cytosol	91.57	91.57
GSMUA_Achr8P23960_001	Banana	cytosol	91.16	91.16
Bra034316.1-P	Field mustard	cytosol	89.96	89.96
CDY48190	Canola	cytosol	89.96	89.96
CDY04473	Canola	cytosol	89.96	89.96
CDX71476	Canola	cytosol	89.56	89.56
CDX77059	Canola	cytosol	89.16	89.16
EER97635	Sorghum	cytosol	88.35	88.35
Os01t0811100-01	Rice	cytosol	87.55	87.55
EES01630	Sorghum	cytosol	71.49	87.25
TraesCS5D01G295300.1	Wheat	cytosol	87.15	87.15
TraesCS5B01G286900.1	Wheat	cytosol	87.15	87.15
TraesCS5A01G287400.1	Wheat	cytosol, golgi, unclear	87.15	87.15
TraesCS1D01G307800.1	Wheat	cytosol	86.35	86.35
TraesCS1B01G319100.1	Wheat	cytosol	86.35	86.35
TraesCS1A01G308400.1	Wheat	cytosol	85.94	85.94
Os05t0490800-01	Rice	cytosol, plasma membrane	85.94	85.94
HORVU0Hr1G001180.1	Barley	cytosol	85.94	85.94
HORVU1Hr1G068490.1	Barley	cytosol	85.94	85.94
Zm00001d012546_P002	Maize	cytosol	87.15	84.77
Zm00001d043137_P004	Maize	cytosol	87.15	84.44
KRH57704	Soybean	cytosol, endoplasmic reticulum	87.55	83.52
Zm00001d022316_P001	Maize	cytosol	87.15	78.91
HORVU5Hr1G076600.1	Barley	plastid	73.09	70.27
AT2G27020.2	Thale cress	cytoskeleton, cytosol, nucleus	89.96	63.82
Zm00001d007038_P001	Maize	cytosol	87.55	56.19
VIT_10s0042g00070.t01	Wine grape	cytosol	31.33	31.2
VIT_01s0011g01960.t01	Wine grape	cytosol	29.32	31.06
VIT_09s0002g00980.t01	Wine grape	cytosol	28.51	28.86
VIT_04s0023g03690.t01	Wine grape	cytosol	28.51	28.51
VIT_03s0038g02300.t01	Wine grape	cytosol	28.11	28.11
VIT_18s0001g12760.t01	Wine grape	cytosol	31.33	27.46
VIT_09s0002g00350.t01	Wine grape	endoplasmic reticulum	28.11	23.89

Protein Annotations

EntrezGene:100251722	wikigene:100251722	MapMan:19.2.6.1.1.7	Gene3D:3.60.20.10	UniProt:A5AXI5	EMBL:AM439232
ProteinID:CAN65016	ProteinID:CAN65016.1	ProteinID:CBI32859	ProteinID:CBI32859.3	EMBL:FN596008	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	EntrezGene:LOC100251722
wikigene:LOC100251722	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475
PANTHER:PTHR11599	PANTHER:PTHR11599:SF103	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha3	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b
SMART:SM00948	SUPFAM:SSF56235	MEROPS:T01.977	TIGR:TC55444	UniParc:UPI000151FA68	ArrayExpress:VIT_08s0040g00410
EnsemblPlantsGene:VIT_08s0040g00410	EnsemblPlants:VIT_08s0040g00410.t01	unigene:Vvi.1689	RefSeq:XP_002283849	RefSeq:XP_002283849.1	SEG:seg

Description

Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A5AXI5]

Coordinates

chr8:+:11340548..11353795

Molecular Weight (calculated)

27192.6 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.166

Length

249 amino acids

Sequence
(BLAST)

001: MSSIGTGYDL SVTTFSPDGR VFQIEYAAKA VDNSGTVIGI KCKDGIVLGV EKLIASKMML PGSNRRIHSV HRHSGMAVAG LAADGRQIVA RAKAEATNYQ
101: SVYGEAIPVK ELAERVASYV HLCTLYWWLR PFGCGVILGG YDRDGPQLYM VEPSGVSYRY FGAAIGKGRQ AAKTEIEKLK LSELSCRQGV IEVAKIIYGV
201: HDEAKDKAFE LEMSWVCEES NRQHQKVPDD LLEEAKAAAK AALEEMDAD

Best Arabidopsis Sequence Match ( AT2G27020.2 )
(BLAST)

001: MWLIIQNYTK EENHLKIFTI PLKDYQRMGQ IIILIKPVNN RIDPPDKTTR IVLISNPESD GAPKIWLVSG LRTKKTPFFD LSLNHSTKKK SEKSQRKKKS
101: RKMSSIGTGY DLSVTTFSPD GRVFQIEYAA KAVDNSGTVV GIKCKDGIVM GVEKLIASKM MLPGSNRRIH SVHRHAGMAV AGLAADGRQI VARAKSEARS
201: YESVYGDAVP VKELSERVAS YVHLCTLYWW LRPFGCGVIL GGYDRDGPQL YMIEPSGISY RYFGAAIGKG KQAAKTEIEK LNLSEMTCKE GVIEVAKIIY
301: KLHDEAKDKA FELEMSWICE ESKREHQKVP DDLLEEAKTA AKTALEEMDA D

Arabidopsis Description

PAG120S proteasome alpha subunit G1 [Source:TAIR;Acc:AT2G27020]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.