Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0137g00420.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G05840.1 | VIT_01s0137g00420.t01 | AT5G40580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 92.68 | 92.68 |
| Solyc12g009140.1.1 | Tomato | extracellular | 91.46 | 91.46 |
| PGSC0003DMT400007520 | Potato | cytosol, extracellular | 91.46 | 91.46 |
| KRH26034 | Soybean | nucleus | 91.06 | 91.06 |
| KRH55422 | Soybean | cytosol, endoplasmic reticulum | 91.06 | 91.06 |
| GSMUA_Achr6P11610_001 | Banana | cytosol | 90.65 | 90.65 |
| AT2G05840.1 | Thale cress | cytosol | 87.8 | 87.8 |
| Bra013157.1-P | Field mustard | cytosol | 87.4 | 87.4 |
| Bra015170.1-P | Field mustard | cytosol | 87.4 | 87.4 |
| CDY18045 | Canola | cytosol | 87.4 | 87.4 |
| CDY33398 | Canola | cytosol, extracellular | 87.4 | 87.4 |
| CDY50408 | Canola | cytosol, extracellular | 86.18 | 86.89 |
| AT5G35590.1 | Thale cress | cytosol | 85.37 | 85.37 |
| Zm00001d048271_P001 | Maize | cytosol, extracellular | 85.37 | 85.37 |
| Zm00001d027896_P001 | Maize | cytosol, extracellular, mitochondrion | 85.37 | 85.37 |
| Os03t0180400-01 | Rice | cytosol | 85.37 | 85.37 |
| EER92751 | Sorghum | cytosol | 85.37 | 85.37 |
| TraesCS4D01G295500.1 | Wheat | cytosol, golgi, plastid, unclear | 83.74 | 83.74 |
| TraesCS4A01G008300.1 | Wheat | cytosol, golgi, plastid, unclear | 82.93 | 82.93 |
| CDX93103 | Canola | cytosol | 86.99 | 81.37 |
| HORVU4Hr1G076770.2 | Barley | cytosol | 83.33 | 72.69 |
| GSMUA_Achr3P02110_001 | Banana | cytosol | 36.18 | 64.96 |
| KXG36677 | Sorghum | plastid | 62.2 | 55.84 |
| TraesCS2D01G177600.1 | Wheat | mitochondrion | 56.1 | 51.49 |
| TraesCS2A01G170100.1 | Wheat | mitochondrion | 55.28 | 50.75 |
| Os07t0614100-01 | Rice | cytosol | 52.03 | 50.59 |
| TraesCS2B01G196400.1 | Wheat | mitochondrion | 54.47 | 46.05 |
| Zm00001d022131_P001 | Maize | mitochondrion | 55.69 | 43.08 |
| VIT_01s0011g01960.t01 | Wine grape | cytosol | 34.55 | 36.17 |
| VIT_04s0023g03690.t01 | Wine grape | cytosol | 36.18 | 35.74 |
| VIT_03s0038g02300.t01 | Wine grape | cytosol | 35.77 | 35.34 |
| VIT_10s0042g00070.t01 | Wine grape | cytosol | 32.52 | 32.0 |
| VIT_08s0040g00410.t01 | Wine grape | cytosol | 28.86 | 28.51 |
| VIT_18s0001g12760.t01 | Wine grape | cytosol | 31.3 | 27.11 |
| VIT_09s0002g00350.t01 | Wine grape | endoplasmic reticulum | 30.89 | 25.94 |
Protein Annotations
| EntrezGene:100261826 | wikigene:100261826 | MapMan:19.2.6.1.1.1 | Gene3D:3.60.20.10 | UniProt:A5ALB2 | EMBL:AM429462 |
| ProteinID:CAN73517 | ProteinID:CAN73517.1 | ProteinID:CBI35851 | ProteinID:CBI35851.3 | EMBL:FN596494 | GO:GO:0000502 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0019773 | GO:GO:0051603 | InterPro:IPR023332 | InterPro:IPR029055 | EntrezGene:LOC100261826 |
| wikigene:LOC100261826 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 | PFscan:PS51475 |
| PANTHER:PTHR11599 | PANTHER:PTHR11599:SF54 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | InterPro:Proteasome_subunit_alpha6 |
| SMART:SM00948 | SUPFAM:SSF56235 | MEROPS:T01.971 | UniParc:UPI000151EC94 | ArrayExpress:VIT_09s0002g00980 | EnsemblPlantsGene:VIT_09s0002g00980 |
| EnsemblPlants:VIT_09s0002g00980.t01 | unigene:Vvi.7441 | RefSeq:XP_002271929 | RefSeq:XP_002271929.1 | : | : |
Description
Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A5ALB2]
Coordinates
chr9:+:718031..723503
Molecular Weight (calculated)
27326.6 Da
IEP (calculated)
6.254
GRAVY (calculated)
-0.254
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRGSGGGYD RHITIFSPEG RLFQVEYAFK AVKASGITSI GVRGKDSVCV VTQKKVPDKL LDQTSVTHLF PITKFLGLLA TGMTADARTL VQQARNEAAE
101: FRFRYGYEMP VDVLARWIAD KSQVYTQHAY MRPLGVVAMI LGIDDENGPR LFKCDPAGHF FGHKATSAGL KEQEAINFLE KKMKNDPAFS YDETVQTAIS
201: ALQSVLQEDF KPNEIEVGVV RTDSPAFRVL STEEIDEHLT AISERD
101: FRFRYGYEMP VDVLARWIAD KSQVYTQHAY MRPLGVVAMI LGIDDENGPR LFKCDPAGHF FGHKATSAGL KEQEAINFLE KKMKNDPAFS YDETVQTAIS
201: ALQSVLQEDF KPNEIEVGVV RTDSPAFRVL STEEIDEHLT AISERD
001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD
Arabidopsis Description
PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.