Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os05t0187000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G05840.1 | Os05t0187000-01 | AT5G40580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 53.36 | 54.88 |
| GSMUA_Achr6P11610_001 | Banana | cytosol | 52.96 | 54.47 |
| PGSC0003DMT400007520 | Potato | cytosol, extracellular | 52.17 | 53.66 |
| Solyc12g009140.1.1 | Tomato | extracellular | 52.17 | 53.66 |
| Os03t0180400-01 | Rice | cytosol | 52.17 | 53.66 |
| VIT_09s0002g00980.t01 | Wine grape | cytosol | 50.59 | 52.03 |
| KRH26034 | Soybean | nucleus | 49.8 | 51.22 |
| AT2G05840.1 | Thale cress | cytosol | 49.8 | 51.22 |
| KRH55422 | Soybean | cytosol, endoplasmic reticulum | 49.8 | 51.22 |
| AT5G35590.1 | Thale cress | cytosol | 49.8 | 51.22 |
| TraesCS2D01G177600.1 | Wheat | mitochondrion | 54.15 | 51.12 |
| TraesCS2A01G170100.1 | Wheat | mitochondrion | 54.15 | 51.12 |
| CDY33398 | Canola | cytosol, extracellular | 48.22 | 49.59 |
| CDY18045 | Canola | cytosol | 48.22 | 49.59 |
| Bra015170.1-P | Field mustard | cytosol | 48.22 | 49.59 |
| Bra013157.1-P | Field mustard | cytosol | 47.83 | 49.19 |
| CDY50408 | Canola | cytosol, extracellular | 47.43 | 49.18 |
| KXG36677 | Sorghum | plastid | 52.17 | 48.18 |
| CDX93103 | Canola | cytosol | 48.22 | 46.39 |
| TraesCS2B01G196400.1 | Wheat | mitochondrion | 52.96 | 46.05 |
| GSMUA_Achr3P02110_001 | Banana | cytosol | 21.34 | 39.42 |
| Zm00001d022131_P001 | Maize | mitochondrion | 47.83 | 38.05 |
| Os03t0387100-01 | Rice | cytosol, plasma membrane | 26.88 | 28.94 |
| Os02t0634900-01 | Rice | cytosol, plasma membrane | 26.88 | 28.94 |
| Os11t0615700-01 | Rice | peroxisome | 25.69 | 27.43 |
| Os08t0548900-01 | Rice | plastid | 26.88 | 27.31 |
| Os09t0538200-01 | Rice | cytosol, plastid | 26.88 | 27.31 |
| Os06t0167600-01 | Rice | cytosol | 22.53 | 22.8 |
| Os02t0133800-01 | Rice | plastid | 24.11 | 22.59 |
| Os06t0177100-01 | Rice | plastid | 22.13 | 22.4 |
| Os06t0176000-01 | Rice | cytosol | 22.13 | 22.4 |
| Os01t0811100-01 | Rice | cytosol | 21.34 | 21.69 |
| Os05t0490800-01 | Rice | cytosol, plasma membrane | 20.95 | 21.29 |
Protein Annotations
| MapMan:19.2.6.1.1.1 | Gene3D:3.60.20.10 | EntrezGene:4343891 | EMBL:AB032062 | EMBL:AK058885 | EMBL:AK069145 |
| EMBL:AK102448 | ProteinID:BAC80087.1 | ProteinID:BAF22175.1 | ProteinID:BAT02632.1 | GO:GO:0000502 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0019773 | GO:GO:0051603 | InterPro:IPR023332 | InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | EnsemblPlantsGene:Os07g0614100 |
| EnsemblPlants:Os07t0614100-01 | PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 | PFscan:PS51475 | PANTHER:PTHR11599 |
| PANTHER:PTHR11599:SF54 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | InterPro:Proteasome_subunit_alpha6 | UniProt:Q94II8 |
| SMART:SM00948 | SUPFAM:SSF56235 | MEROPS:T01.971 | UniParc:UPI00000A2FFA | RefSeq:XP_015644554.1 | SEG:seg |
Description
20S proteasome alpha2 subunitAlpha 1-2 subunit of 20S proteasome. (Os07t0614100-01)
Coordinates
chr7:-:25289257..25293741
Molecular Weight (calculated)
27820.4 Da
IEP (calculated)
9.349
GRAVY (calculated)
-0.313
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEAEAAAVV TGGGSRAAGP ADYERFITLF SPEGRLCQLD YAFNAVKLAG ITSVGVRGDD SVYVLTHRKE DKLHDPTTIT NLFAITDRIG LLATGMPGDG
101: RAIAQEARNA AAEFRFKWGY KMSPCMLAQW IADRAQIRTQ HAQIRPYGVV SMIFGIDEEK GTPELFTCDP AGQFFAHKAT SAGPKEKEVM NFLEERMKSK
201: PSLSSGTTKG LAKSALKHVL EGDFYAREFE LGFIKKGDPT VTLHPVKFKR TRR
101: RAIAQEARNA AAEFRFKWGY KMSPCMLAQW IADRAQIRTQ HAQIRPYGVV SMIFGIDEEK GTPELFTCDP AGQFFAHKAT SAGPKEKEVM NFLEERMKSK
201: PSLSSGTTKG LAKSALKHVL EGDFYAREFE LGFIKKGDPT VTLHPVKFKR TRR
001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD
Arabidopsis Description
PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.