CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER98255
KXG19118
OQU86162

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05840.1	EER98255	AT5G40580.1	21798944
AT2G05840.1	KXG19118	AT5G40580.1	21798944
AT2G05840.1	OQU86162	AT5G40580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P11610_001	Banana	cytosol	57.66	64.23
GSMUA_Achr10P...	Banana	cytosol	57.66	64.23
Solyc12g009140.1.1	Tomato	extracellular	57.3	63.82
PGSC0003DMT400007520	Potato	cytosol, extracellular	57.3	63.82
KRH55422	Soybean	cytosol, endoplasmic reticulum	56.93	63.41
KRH26034	Soybean	nucleus	56.93	63.41
Zm00001d022131_P001	Maize	mitochondrion	72.99	62.89
EER92751	Sorghum	cytosol	56.2	62.6
VIT_09s0002g00980.t01	Wine grape	cytosol	55.84	62.2
AT2G05840.1	Thale cress	cytosol	55.47	61.79
AT5G35590.1	Thale cress	cytosol	54.74	60.98
Bra015170.1-P	Field mustard	cytosol	54.01	60.16
CDY18045	Canola	cytosol	54.01	60.16
CDY33398	Canola	cytosol, extracellular	54.01	60.16
CDY50408	Canola	cytosol, extracellular	53.28	59.84
Bra013157.1-P	Field mustard	cytosol	53.65	59.76
CDX93103	Canola	cytosol	53.28	55.51
Os07t0614100-01	Rice	cytosol	48.18	52.17
TraesCS2A01G170100.1	Wheat	mitochondrion	49.27	50.37
GSMUA_Achr3P02110_001	Banana	cytosol	25.18	50.37
TraesCS2D01G177600.1	Wheat	mitochondrion	48.91	50.0
TraesCS2B01G196400.1	Wheat	mitochondrion	49.63	46.74
EER97100	Sorghum	cytosol	30.29	33.33
EES15231	Sorghum	cytosol	29.2	32.13
EER94765	Sorghum	cytosol	26.64	31.06
EES05472	Sorghum	cytosol	26.64	31.06
EES10115	Sorghum	peroxisome	24.82	28.69
OQU93221	Sorghum	cytosol	24.45	28.27
OQU75904	Sorghum	cytosol	25.55	28.0
EES04466	Sorghum	cytosol	25.18	25.56
EES01630	Sorghum	cytosol	18.98	25.49
EER97635	Sorghum	cytosol	22.99	25.3

Protein Annotations

MapMan:19.2.6.1.1.1	Gene3D:3.60.20.10	UniProt:A0A1B6QFH5	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	EnsemblPlants:KXG36677	ProteinID:KXG36677	ProteinID:KXG36677.1
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF54
InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	EnsemblPlantsGene:SORBI_3002G373300	SUPFAM:SSF56235
UniParc:UPI00081ABAE9	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:73139984..73143865

Molecular Weight (calculated)

30248.0 Da

IEP (calculated)

8.923

GRAVY (calculated)

-0.327

Length

274 amino acids

Sequence
(BLAST)

001: MPVAEVTSGG SRHRARAVSA DRLVTVFSAN GRLYQVDYAW NATRLAGVTS VGVRGADSVC VVGQRKPSAP KDKLLDMTSV SRLFRITERL GLLATGIVGE
101: GRALAHEARN QTAEFRFQWG YEMPPDVLAQ WIADRAQIWT QYGSRRPSGV VAMILGIDDE KETPQLYTSD PAGYFFGHKA ASAGQRDREA VNFLEKRMKN
201: NPSLSFQETV QMAISALQFA LKEDLKATEI EVGVVRTNDP TFRVLTEAEI DEHLKAINPG KAELKDKQSS LLSY

Best Arabidopsis Sequence Match ( AT2G05840.1 )
(BLAST)

001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD

Arabidopsis Description

PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.