Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G05840.1 | EER98255 | AT5G40580.1 | 21798944 |
| AT2G05840.1 | KXG19118 | AT5G40580.1 | 21798944 |
| AT2G05840.1 | OQU86162 | AT5G40580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027896_P001 | Maize | cytosol, extracellular, mitochondrion | 99.19 | 99.19 |
| Zm00001d048271_P001 | Maize | cytosol, extracellular | 98.37 | 98.37 |
| Os03t0180400-01 | Rice | cytosol | 96.34 | 96.34 |
| TraesCS4D01G295500.1 | Wheat | cytosol, golgi, plastid, unclear | 94.72 | 94.72 |
| TraesCS4A01G008300.1 | Wheat | cytosol, golgi, plastid, unclear | 94.72 | 94.72 |
| GSMUA_Achr6P11610_001 | Banana | cytosol | 90.65 | 90.65 |
| GSMUA_Achr10P... | Banana | cytosol | 89.84 | 89.84 |
| Solyc12g009140.1.1 | Tomato | extracellular | 86.99 | 86.99 |
| PGSC0003DMT400007520 | Potato | cytosol, extracellular | 86.99 | 86.99 |
| KRH26034 | Soybean | nucleus | 86.59 | 86.59 |
| KRH55422 | Soybean | cytosol, endoplasmic reticulum | 85.77 | 85.77 |
| VIT_09s0002g00980.t01 | Wine grape | cytosol | 85.37 | 85.37 |
| AT5G35590.1 | Thale cress | cytosol | 84.96 | 84.96 |
| AT2G05840.1 | Thale cress | cytosol | 84.55 | 84.55 |
| CDY33398 | Canola | cytosol, extracellular | 83.74 | 83.74 |
| Bra015170.1-P | Field mustard | cytosol | 83.74 | 83.74 |
| CDY18045 | Canola | cytosol | 83.74 | 83.74 |
| CDY50408 | Canola | cytosol, extracellular | 82.52 | 83.2 |
| HORVU4Hr1G076770.2 | Barley | cytosol | 95.12 | 82.98 |
| Bra013157.1-P | Field mustard | cytosol | 82.93 | 82.93 |
| CDX93103 | Canola | cytosol | 83.33 | 77.95 |
| GSMUA_Achr3P02110_001 | Banana | cytosol | 35.37 | 63.5 |
| KXG36677 | Sorghum | plastid | 62.6 | 56.2 |
| EER97100 | Sorghum | cytosol | 36.18 | 35.74 |
| EES15231 | Sorghum | cytosol | 35.37 | 34.94 |
| EES05472 | Sorghum | cytosol | 31.71 | 33.19 |
| EER94765 | Sorghum | cytosol | 31.3 | 32.77 |
| EES10115 | Sorghum | peroxisome | 30.89 | 32.07 |
| OQU93221 | Sorghum | cytosol | 30.89 | 32.07 |
| OQU75904 | Sorghum | cytosol | 31.71 | 31.2 |
| EES01630 | Sorghum | cytosol | 25.61 | 30.88 |
| EES04466 | Sorghum | cytosol | 30.89 | 28.15 |
| EER97635 | Sorghum | cytosol | 28.46 | 28.11 |
Protein Annotations
| MapMan:19.2.6.1.1.1 | Gene3D:3.60.20.10 | EntrezGene:8082013 | UniProt:C5WVT0 | EnsemblPlants:EER92751 | ProteinID:EER92751 |
| ProteinID:EER92751.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0005829 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0010043 | GO:GO:0016020 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 | GO:GO:0051603 | InterPro:IPR023332 | InterPro:IPR029055 |
| InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 | PFscan:PS51475 | PANTHER:PTHR11599 |
| PANTHER:PTHR11599:SF54 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | InterPro:Proteasome_subunit_alpha6 | SMART:SM00948 |
| EnsemblPlantsGene:SORBI_3001G483100 | SUPFAM:SSF56235 | unigene:Sbi.14193 | UniParc:UPI0001A829E2 | RefSeq:XP_002465753.1 | : |
Description
hypothetical protein
Coordinates
chr1:+:75443322..75446022
Molecular Weight (calculated)
27416.7 Da
IEP (calculated)
6.522
GRAVY (calculated)
-0.235
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRGTGAGYD RHITIFSPEG RLYQVEYAFK AVKSAGVTSI GVRGADSVCV VTQKKVPDKL LDQTSVTHLF PITKFVGLLA TGLTADARSL VSQARNEAAE
101: FRFKWGYEMP VDVLAKWIAD KAQVYTQHAY MRPLGVVAMV LGYDEEKNAQ LFKCDPAGHF FGHKATSAGL KEQEAINFLE KKMKDDPKFT YDETVQIAIS
201: ALQSVLQEDF KATEIEVGVV RKEDRVFRAL TTEEIDQHLT AISERD
101: FRFKWGYEMP VDVLAKWIAD KAQVYTQHAY MRPLGVVAMV LGYDEEKNAQ LFKCDPAGHF FGHKATSAGL KEQEAINFLE KKMKDDPKFT YDETVQIAIS
201: ALQSVLQEDF KATEIEVGVV RKEDRVFRAL TTEEIDQHLT AISERD
001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKTAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVTHLF PITKYIGLVA TGITADARSL VQQARNQAAE
101: FRFTYGYEMP VDILAKWIAD KSQVYTQHAY MRPLGVVAMV MGVDEENGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPSFT FDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RAENPEFRAL TTEEIEEHLT AISERD
101: FRFTYGYEMP VDILAKWIAD KSQVYTQHAY MRPLGVVAMV MGVDEENGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPSFT FDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RAENPEFRAL TTEEIEEHLT AISERD
Arabidopsis Description
PAA1Proteasome subunit alpha type-6-A [Source:UniProtKB/Swiss-Prot;Acc:O81146]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.