Factsheet for Zm00001d027896_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d019262_P001
Zm00001d035915_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05840.1	Zm00001d019262_P001	AT5G40580.1	21798944
AT2G05840.1	Zm00001d035915_P001	AT5G40580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92751	Sorghum	cytosol	99.19	99.19
Zm00001d048271_P001	Maize	cytosol, extracellular	98.37	98.37
Os03t0180400-01	Rice	cytosol	97.15	97.15
TraesCS4D01G295500.1	Wheat	cytosol, golgi, plastid, unclear	94.72	94.72
TraesCS4A01G008300.1	Wheat	cytosol, golgi, plastid, unclear	94.72	94.72
GSMUA_Achr10P...	Banana	cytosol	90.65	90.65
GSMUA_Achr6P11610_001	Banana	cytosol	90.65	90.65
Solyc12g009140.1.1	Tomato	extracellular	86.99	86.99
PGSC0003DMT400007520	Potato	cytosol, extracellular	86.99	86.99
KRH55422	Soybean	cytosol, endoplasmic reticulum	86.59	86.59
KRH26034	Soybean	nucleus	86.59	86.59
AT2G05840.1	Thale cress	cytosol	85.37	85.37
VIT_09s0002g00980.t01	Wine grape	cytosol	85.37	85.37
AT5G35590.1	Thale cress	cytosol	84.96	84.96
CDY33398	Canola	cytosol, extracellular	84.55	84.55
CDY18045	Canola	cytosol	84.55	84.55
Bra015170.1-P	Field mustard	cytosol	84.55	84.55
CDY50408	Canola	cytosol, extracellular	83.33	84.02
Bra013157.1-P	Field mustard	cytosol	83.74	83.74
HORVU4Hr1G076770.2	Barley	cytosol	95.12	82.98
CDX93103	Canola	cytosol	84.15	78.71
GSMUA_Achr3P02110_001	Banana	cytosol	35.37	63.5
Zm00001d022131_P001	Maize	mitochondrion	56.1	43.4
Zm00001d022629_P001	Maize	cytosol	36.59	36.14
Zm00001d006235_P001	Maize	cytosol, extracellular	35.77	35.34
Zm00001d053217_P001	Maize	cytosol, extracellular	34.55	34.14
Zm00001d017338_P006	Maize	cytosol	31.71	32.5
Zm00001d017336_P007	Maize	cytosol	31.71	32.5
Zm00001d027688_P002	Maize	peroxisome	30.89	32.07
Zm00001d036319_P001	Maize	cytosol	31.71	31.2
Zm00001d045194_P001	Maize	extracellular	31.71	31.2
Zm00001d034938_P001	Maize	cytosol	12.2	30.0
Zm00001d015180_P001	Maize	extracellular, mitochondrion, plasma membrane	32.11	28.83
Zm00001d012546_P002	Maize	cytosol	29.27	28.12
Zm00001d043137_P004	Maize	cytosol	28.05	26.85
Zm00001d048403_P001	Maize	extracellular	30.49	25.6
Zm00001d022316_P001	Maize	cytosol	28.46	25.45
Zm00001d017340_P002	Maize	cytosol	18.29	23.68
Zm00001d007038_P001	Maize	cytosol	28.46	18.04
Zm00001d051211_P008	Maize	cytosol	31.71	16.6

Protein Annotations

MapMan:19.2.6.1.1.1	Gene3D:3.60.20.10	EMBL:BT067072	UniProt:C0PFK3	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0010045	GO:GO:0016787
GO:GO:0019538	GO:GO:0019773	GO:GO:0032025	GO:GO:0046686	GO:GO:0051603	InterPro:IPR023332
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	ProteinID:ONL94246.1	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF54	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b
InterPro:Proteasome_subunit_alpha6	SMART:SM00948	SUPFAM:SSF56235	MEROPS:T01.971	UniParc:UPI000195CA1A	EnsemblPlantsGene:Zm00001d027896
EnsemblPlants:Zm00001d027896_P001	EnsemblPlants:Zm00001d027896_T001	:	:	:	:

Description

Proteasome subunit alpha type

Coordinates

chr1:-:16977162..16980228

Molecular Weight (calculated)

27418.7 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.252

Length

246 amino acids

Sequence
(BLAST)

001: MSRGTGAGYD RHITIFSPEG RLYQVEYAFK AVKSAGVTSI GVRGADSVCV VTQKKVPDKL LDQTSVTHLF PITKYVGLLA TGLTADARSL VSQARNEAAE
101: FRFKWGYEMP VDVLAKWIAD KAQVYTQHAY MRPLGVVAMV LGYDEEKNAQ LFKCDPAGHF FGHKATSAGL KEQEAINFLE KKMKDDPKFT YDETVQIAIS
201: ALQSVLQEDF KATEIEVGVV RKDDRVFRAL TTEEIDQHLT AISERD

Best Arabidopsis Sequence Match ( AT2G05840.1 )
(BLAST)

001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD

Arabidopsis Description

PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.