Factsheet for Zm00001d017340_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05472	Sorghum	cytosol	75.79	61.28
TraesCS3D01G285400.1	Wheat	cytosol	74.74	60.43
TraesCS2A01G189400.1	Wheat	cytosol	74.21	60.0
TraesCS2B01G217800.1	Wheat	cytosol	74.21	60.0
TraesCS2D01G198400.1	Wheat	cytosol	74.21	60.0
TraesCS3A01G285600.1	Wheat	cytosol	74.21	60.0
HORVU3Hr1G068660.1	Barley	cytosol	74.21	60.0
Zm00001d017336_P007	Maize	cytosol	75.79	60.0
Zm00001d017338_P006	Maize	cytosol	75.79	60.0
Os02t0634900-01	Rice	cytosol, plasma membrane	73.68	59.57
TraesCS3B01G319500.1	Wheat	cytosol	74.21	58.26
GSMUA_Achr5P19360_001	Banana	cytosol	70.0	56.6
VIT_01s0011g01960.t01	Wine grape	cytosol	68.42	55.32
CDY22253	Canola	cytosol	68.42	55.32
CDY26894	Canola	cytosol	68.42	55.32
CDX79306	Canola	cytosol	68.42	55.32
GSMUA_Achr8P13980_001	Banana	cytosol	68.42	55.32
CDX68003	Canola	cytosol, extracellular	68.42	55.32
Bra035099.1-P	Field mustard	cytosol	68.42	55.32
Bra008402.1-P	Field mustard	cytosol	68.42	55.32
AT1G16470.2	Thale cress	cytosol	68.42	55.32
AT1G79210.1	Thale cress	cytosol	67.89	54.89
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	67.89	54.89
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	67.37	54.47
Solyc10g008010.2.1	Tomato	extracellular, plastid	67.37	54.47
PGSC0003DMT400027339	Potato	cytosol	67.37	54.47
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	67.37	54.47
KRH13728	Soybean	cytosol	67.37	54.47
PGSC0003DMT400052657	Potato	cytosol	67.37	54.47
KRH65961	Soybean	cytosol	66.84	54.04
Bra003618.1-P	Field mustard	cytosol	68.42	53.06
HORVU2Hr1G036390.6	Barley	plastid	74.21	52.22
CDX88517	Canola	cytosol	68.42	42.35
CDX87400	Canola	extracellular	68.42	40.62
Zm00001d051211_P008	Maize	cytosol	76.32	30.85
Zm00001d053217_P001	Maize	cytosol, extracellular	29.47	22.49
Zm00001d006235_P001	Maize	cytosol, extracellular	29.47	22.49
Zm00001d022629_P001	Maize	cytosol	28.95	22.09
Zm00001d045194_P001	Maize	extracellular	27.89	21.2
Zm00001d036319_P001	Maize	cytosol	27.89	21.2
Zm00001d027688_P002	Maize	peroxisome	24.74	19.83
Zm00001d015180_P001	Maize	extracellular, mitochondrion, plasma membrane	26.84	18.61
Zm00001d027896_P001	Maize	cytosol, extracellular, mitochondrion	23.68	18.29
Zm00001d048271_P001	Maize	cytosol, extracellular	23.68	18.29
Zm00001d048403_P001	Maize	extracellular	24.74	16.04
Zm00001d012546_P002	Maize	cytosol	21.58	16.02
Zm00001d043137_P004	Maize	cytosol	21.05	15.56
Zm00001d022316_P001	Maize	cytosol	21.05	14.55
Zm00001d022131_P001	Maize	mitochondrion	19.47	11.64
Zm00001d007038_P001	Maize	cytosol	21.58	10.57
Zm00001d034938_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.60.20.10	MapMan:50.3.4	UniProt:A0A1D6HE74	ProteinID:AQK72950.1	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF16
InterPro:Proteasome_alpha-type	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha2	SUPFAM:SSF56235	UniParc:UPI000842F3E5	EnsemblPlantsGene:Zm00001d017340
EnsemblPlants:Zm00001d017340_P002	EnsemblPlants:Zm00001d017340_T002	:	:	:	:

Description

Proteasome subunit alpha type-2-B

Coordinates

chr5:+:193375045..193381418

Molecular Weight (calculated)

21261.5 Da

IEP (calculated)

7.406

GRAVY (calculated)

-0.250

Length

190 amino acids

Sequence
(BLAST)

001: MGPDFRVLVR KSRKQAQQYY WLYKEHIPVT QLVRETAAVM QEFTQSGGVR PFGVSLLIAG YDDNGPQLYQ VDPSGSYFSW KASAMGKNVS NAKTFLEKRY
101: TEDMELDDAI HTAILTLKEG YEGQISSNNI EIGIIRADRE FKGNSFKPSR DQGFLGRGGV SCLLMILVRT TIAVSLMSSQ PEDCLGFITL

Best Arabidopsis Sequence Match ( AT1G16470.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.