Factsheet for PGSC0003DMT400052657

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g055080.2.1	Tomato	cytosol, endoplasmic reticulum	99.15	99.15
PGSC0003DMT400027339	Potato	cytosol	96.17	96.17
VIT_01s0011g01960.t01	Wine grape	cytosol	94.89	94.89
AT1G79210.1	Thale cress	cytosol	93.62	93.62
AT1G16470.2	Thale cress	cytosol	93.62	93.62
CDY26894	Canola	cytosol	93.62	93.62
CDY22253	Canola	cytosol	93.62	93.62
Bra035099.1-P	Field mustard	cytosol	93.62	93.62
Bra008402.1-P	Field mustard	cytosol	93.62	93.62
CDX68003	Canola	cytosol, extracellular	93.19	93.19
KRH43728	Soybean	cytosol, endoplasmic reticulum, nucleus	93.19	93.19
CDX79306	Canola	cytosol	92.77	92.77
KRH13728	Soybean	cytosol	92.77	92.77
KRH75739	Soybean	cytosol, endoplasmic reticulum, nucleus	92.34	92.34
KRH65961	Soybean	cytosol	91.91	91.91
GSMUA_Achr5P19360_001	Banana	cytosol	91.49	91.49
EER94765	Sorghum	cytosol	89.79	89.79
Bra003618.1-P	Field mustard	cytosol	93.19	89.39
EES05472	Sorghum	cytosol	89.36	89.36
GSMUA_Achr8P13980_001	Banana	cytosol	89.36	89.36
TraesCS2D01G198400.1	Wheat	cytosol	88.94	88.94
Os03t0387100-01	Rice	cytosol, plasma membrane	88.94	88.94
TraesCS2A01G189400.1	Wheat	cytosol	88.94	88.94
TraesCS2B01G217800.1	Wheat	cytosol	88.94	88.94
TraesCS3A01G285600.1	Wheat	cytosol	88.94	88.94
TraesCS3D01G285400.1	Wheat	cytosol	88.94	88.94
HORVU3Hr1G068660.1	Barley	cytosol	88.94	88.94
Os02t0634900-01	Rice	cytosol, plasma membrane	88.94	88.94
Zm00001d017338_P006	Maize	cytosol	89.36	87.5
Zm00001d017336_P007	Maize	cytosol	89.36	87.5
TraesCS3B01G319500.1	Wheat	cytosol	88.94	86.36
HORVU2Hr1G036390.6	Barley	plastid	85.11	74.07
CDX88517	Canola	cytosol	93.62	71.66
CDX87400	Canola	extracellular	93.62	68.75
Zm00001d017340_P002	Maize	cytosol	54.47	67.37
HORVU3Hr1G068630.1	Barley	mitochondrion	37.02	57.24
Zm00001d051211_P008	Maize	cytosol	89.36	44.68
PGSC0003DMT400015849	Potato	cytosol	38.3	36.14
PGSC0003DMT400049388	Potato	cytosol	34.47	32.53
PGSC0003DMT400007520	Potato	cytosol, extracellular	34.04	32.52
PGSC0003DMT400024982	Potato	cytosol, nucleus, peroxisome	32.77	32.49
PGSC0003DMT400054523	Potato	cytosol	32.34	32.07
PGSC0003DMT400018852	Potato	cytosol	33.62	31.85
PGSC0003DMT400072226	Potato	cytosol	31.06	29.32
PGSC0003DMT400009588	Potato	cytosol	34.04	29.2
PGSC0003DMT400039976	Potato	cytosol	33.62	28.94
PGSC0003DMT400018521	Potato	cytosol	30.64	28.92

Protein Annotations

EntrezGene:102600813	MapMan:19.2.6.1.1.2	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	UniProt:M1BTS6	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	EnsemblPlantsGene:PGSC0003DMG400020441	PGSC:PGSC0003DMG400020441	EnsemblPlants:PGSC0003DMT400052657	ScanProsite:PS00388	PFscan:PS51475
PANTHER:PTHR11599	PANTHER:PTHR11599:SF16	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha2
SMART:SM00948	SUPFAM:SSF56235	MEROPS:T01.972	UniParc:UPI000295D02F	RefSeq:XP_006348871.1	:

Description

Proteasome subunit alpha type [Source:PGSC_GENE;Acc:PGSC0003DMG400020441]

Coordinates

chr7:+:50204937..50210786

Molecular Weight (calculated)

25674.6 Da

IEP (calculated)

5.132

GRAVY (calculated)

-0.188

Length

235 amino acids

Sequence
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQTLTP NIGVVYSGMG PDSRVLVRKS RKSAEQYYRL
101: YKESIPVTQL VRETAAVMQE FTQSGGVRPF GVSLLVAGFD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE EMELDDAVHT AILTLKEGFE
201: GQISSKNIEI GIIGTDKVFR ILTPTEIDDY LQEVE

Best Arabidopsis Sequence Match ( AT1G16470.1 )
(BLAST)

001: MGDSQYSFSL TTFSPSGKLV QIEHALTAVG SGQTSLGIKA SNGVVIATEK KLPSILVDEA SVQKIQHLTP NIGVVYSGMG PDFRVLVRKS RKQAEQYLRL
101: YKEPIPVTQL VRETATVMQE FTQSGGVRPF GVSLLVAGYD DKGPQLYQVD PSGSYFSWKA SAMGKNVSNA KTFLEKRYTE DMELDDAIHT AILTLKEGFE
201: GEISSKNIEI GKIGADKVFR VLTPAEIDDY LAEVE

Arabidopsis Description

PAB1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178WA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.