Factsheet for PGSC0003DMT400009588

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g080590.2.1	Tomato	extracellular	98.54	91.22
PGSC0003DMT400039976	Potato	cytosol	88.32	88.64
VIT_18s0001g12760.t01	Wine grape	cytosol	86.86	83.8
KRH05846	Soybean	cytosol, nucleus	82.48	79.58
KRH38836	Soybean	cytosol, nucleus	82.48	79.3
CDY21248	Canola	cytosol	40.51	79.29
KRH15173	Soybean	cytosol, nucleus	82.48	78.47
CDY02422	Canola	cytosol	77.01	77.86
Bra035332.1-P	Field mustard	cytosol	77.01	77.86
Bra014068.1-P	Field mustard	cytosol	76.64	77.78
CDY17035	Canola	cytosol	77.01	77.29
CDX71518	Canola	cytosol	76.28	77.12
CDY52371	Canola	cytosol	77.37	77.09
CDY47593	Canola	cytosol	76.64	76.92
CDX95156	Canola	cytosol	77.74	76.9
Bra027456.1-P	Field mustard	cytosol	77.01	76.73
AT1G47250.1	Thale cress	cytosol	77.37	76.53
GSMUA_Achr10P...	Banana	cytosol	73.36	75.85
AT5G42790.1	Thale cress	cytosol	76.28	75.18
Os02t0133800-01	Rice	plastid	69.34	70.37
Zm00001d015180_P001	Maize	extracellular, mitochondrion, plasma membrane	69.71	69.71
KRH20407	Soybean	cytosol	38.69	69.28
EES04466	Sorghum	cytosol	67.52	68.52
HORVU6Hr1G017500.1	Barley	cytosol	70.07	66.67
TraesCS6A01G097800.1	Wheat	unclear	69.71	66.32
TraesCS6B01G126000.1	Wheat	cytosol	69.71	66.09
TraesCS6D01G084800.1	Wheat	golgi	69.34	65.97
PGSC0003DMT400024982	Potato	cytosol, nucleus, peroxisome	31.75	36.71
PGSC0003DMT400054523	Potato	cytosol	31.75	36.71
PGSC0003DMT400015849	Potato	cytosol	32.12	35.34
PGSC0003DMT400018852	Potato	cytosol	31.02	34.27
PGSC0003DMT400052657	Potato	cytosol	29.2	34.04
PGSC0003DMT400027339	Potato	cytosol	28.83	33.62
PGSC0003DMT400049388	Potato	cytosol	30.29	33.33
PGSC0003DMT400007520	Potato	cytosol, extracellular	29.93	33.33
PGSC0003DMT400072226	Potato	cytosol	27.01	29.72
PGSC0003DMT400018521	Potato	cytosol	27.01	29.72

Protein Annotations

EntrezGene:102597919	MapMan:19.2.6.1.1.6	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	UniProt:M0ZWK0	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	EnsemblPlantsGene:PGSC0003DMG400003740	PGSC:PGSC0003DMG400003740	EnsemblPlants:PGSC0003DMT400009588	ScanProsite:PS00388	PFscan:PS51475
PANTHER:PTHR11599	PANTHER:PTHR11599:SF12	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha1	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b
SMART:SM00948	SUPFAM:SSF56235	MEROPS:T01.976	UniParc:UPI0002950D9D	RefSeq:XP_006341960.1	SEG:seg

Description

Proteasome subunit alpha type [Source:PGSC_GENE;Acc:PGSC0003DMG400003740]

Coordinates

chr4:-:69973794..69978213

Molecular Weight (calculated)

29898.1 Da

IEP (calculated)

4.684

GRAVY (calculated)

-0.265

Length

274 amino acids

Sequence
(BLAST)

001: MFRNQYDTDV TTWSPAGRLF QVEYAMEAVK QGSAAIGLRS KTHVILASVN KANSELSSHQ KKIFKVDDHI GVAIAGLTAD GRVLSRYMRT ECINYSYSYE
101: SPLPVGRLVV QLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERKFETFM ESSRESLLKD ALFALRETLQ
201: GEKLTSSNCT VAVVGVGEAF HTLDKETIQA LINEFEIAGE DAPAEVPEEA ASDEPAAPEE GAATADEGAA PMDI

Best Arabidopsis Sequence Match ( AT1G47250.1 )
(BLAST)

001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERKFESFQ ESSKEDLIKD AIMAIRETLQ
201: GETLKSSLCT VSVLGVDEPF HFLDQESIQK VIDTFEKVPE EEEDAGEGEA EPEAAPGAAG TGEQGGSGDQ DVAPMEI

Arabidopsis Description

PAF2Proteasome subunit alpha type-1-B [Source:UniProtKB/Swiss-Prot;Acc:O23712]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.