Factsheet for Bra027456.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52371	Canola	cytosol	99.64	99.64
CDX95156	Canola	cytosol	97.82	97.11
Bra035332.1-P	Field mustard	cytosol	94.18	95.57
AT5G42790.1	Thale cress	cytosol	94.91	93.88
Bra014068.1-P	Field mustard	cytosol	91.64	93.33
VIT_18s0001g12760.t01	Wine grape	cytosol	81.09	78.52
KRH38836	Soybean	cytosol, nucleus	80.73	77.89
KRH05846	Soybean	cytosol, nucleus	80.0	77.46
KRH15173	Soybean	cytosol, nucleus	80.73	77.08
PGSC0003DMT400009588	Potato	cytosol	76.73	77.01
PGSC0003DMT400039976	Potato	cytosol	76.36	76.92
GSMUA_Achr10P...	Banana	cytosol	72.0	74.72
Solyc04g080590.2.1	Tomato	extracellular	77.45	71.96
Os02t0133800-01	Rice	plastid	68.36	69.63
KRH20407	Soybean	cytosol	37.82	67.97
EES04466	Sorghum	cytosol	66.55	67.78
Zm00001d015180_P001	Maize	extracellular, mitochondrion, plasma membrane	67.27	67.52
TraesCS6A01G097800.1	Wheat	unclear	67.64	64.58
TraesCS6B01G126000.1	Wheat	cytosol	67.64	64.36
HORVU6Hr1G017500.1	Barley	cytosol	67.27	64.24
TraesCS6D01G084800.1	Wheat	golgi	66.91	63.89
Bra030921.1-P	Field mustard	cytosol	32.0	37.13
Bra035099.1-P	Field mustard	cytosol	30.91	36.17
Bra008402.1-P	Field mustard	cytosol	30.91	36.17
Bra003618.1-P	Field mustard	cytosol	30.91	34.69
Bra036824.1-P	Field mustard	cytosol	30.55	33.6
Bra031328.1-P	Field mustard	cytosol, mitochondrion	30.55	33.6
Bra012861.1-P	Field mustard	cytosol	30.55	33.6
Bra023851.1-P	Field mustard	cytosol	29.82	32.8
Bra015170.1-P	Field mustard	cytosol	28.36	31.71
Bra013157.1-P	Field mustard	cytosol	28.36	31.71
Bra034316.1-P	Field mustard	cytosol	26.55	29.32
Bra037085.1-P	Field mustard	cytosol	30.91	27.6

Protein Annotations

MapMan:19.2.6.1.1.6	Gene3D:3.60.20.10	EnsemblPlantsGene:Bra027456	EnsemblPlants:Bra027456.1	EnsemblPlants:Bra027456.1-P	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	UniProt:M4EF94
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599
PANTHER:PTHR11599:SF12	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha1	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948
SUPFAM:SSF56235	UniParc:UPI000254215E	SEG:seg	:	:	:

Description

AT5G42790 (E=2e-131) PAF1, ATPSM30 | PAF1; endopeptidase/ peptidase/ threonine-type endopeptidase

Coordinates

chrA09:+:14193209..14195013

Molecular Weight (calculated)

29952.1 Da

IEP (calculated)

4.849

GRAVY (calculated)

-0.299

Length

275 amino acids

Sequence
(BLAST)

001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ KKIFKVDDHI GVAIAGLTAD GRVLSRYMRS EAINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DASREDLIKD AILAVRETLQ
201: GETLKSSLCT VSVLGVGEPF HFLDQETIQK VIDTFEKVAE DEEGEAGEGD AEAAAAPAEQ GGGGAGDQDV APMEM

Best Arabidopsis Sequence Match ( AT5G42790.1 )
(BLAST)

001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM

Arabidopsis Description

PAF1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178UFX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.