Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G097800.1 | Wheat | unclear | 98.96 | 98.96 |
| TraesCS6B01G126000.1 | Wheat | cytosol | 98.96 | 98.62 |
| TraesCS6D01G084800.1 | Wheat | golgi | 98.61 | 98.61 |
| Os02t0133800-01 | Rice | plastid | 85.76 | 91.48 |
| Zm00001d015180_P001 | Maize | extracellular, mitochondrion, plasma membrane | 83.68 | 87.96 |
| EES04466 | Sorghum | cytosol | 80.21 | 85.56 |
| GSMUA_Achr10P... | Banana | cytosol | 71.88 | 78.11 |
| PGSC0003DMT400009588 | Potato | cytosol | 66.67 | 70.07 |
| Bra014068.1-P | Field mustard | cytosol | 65.28 | 69.63 |
| PGSC0003DMT400039976 | Potato | cytosol | 65.97 | 69.6 |
| CDY17035 | Canola | cytosol | 65.28 | 68.86 |
| CDY47593 | Canola | cytosol | 64.93 | 68.5 |
| VIT_18s0001g12760.t01 | Wine grape | cytosol | 67.36 | 68.31 |
| AT5G42790.1 | Thale cress | cytosol | 65.28 | 67.63 |
| CDX71518 | Canola | cytosol | 63.54 | 67.53 |
| Bra027456.1-P | Field mustard | cytosol | 64.24 | 67.27 |
| CDY52371 | Canola | cytosol | 64.24 | 67.27 |
| CDX95156 | Canola | cytosol | 64.58 | 67.15 |
| CDY21248 | Canola | cytosol | 32.64 | 67.14 |
| KRH05846 | Soybean | cytosol, nucleus | 65.97 | 66.9 |
| Bra035332.1-P | Field mustard | cytosol | 62.85 | 66.79 |
| CDY02422 | Canola | cytosol | 62.85 | 66.79 |
| AT1G47250.1 | Thale cress | cytosol | 64.24 | 66.79 |
| KRH38836 | Soybean | cytosol, nucleus | 65.62 | 66.32 |
| KRH15173 | Soybean | cytosol, nucleus | 65.62 | 65.62 |
| Solyc04g080590.2.1 | Tomato | extracellular | 67.01 | 65.2 |
| KRH20407 | Soybean | cytosol | 32.99 | 62.09 |
| HORVU4Hr1G040770.1 | Barley | cytosol | 29.51 | 35.87 |
| HORVU1Hr1G068490.1 | Barley | cytosol | 28.47 | 32.93 |
| HORVU0Hr1G001180.1 | Barley | cytosol | 28.47 | 32.93 |
| HORVU5Hr1G083350.1 | Barley | cytosol | 28.12 | 32.53 |
| HORVU3Hr1G068660.1 | Barley | cytosol | 26.39 | 32.34 |
| HORVU5Hr1G038710.1 | Barley | cytosol | 21.18 | 30.65 |
| HORVU6Hr1G051730.1 | Barley | cytosol | 13.19 | 30.65 |
| HORVU7Hr1G057390.2 | Barley | cytosol, nucleus, plastid | 28.47 | 28.87 |
| HORVU7Hr1G027220.2 | Barley | cytosol | 25.69 | 27.92 |
| HORVU4Hr1G076770.2 | Barley | cytosol | 27.08 | 27.66 |
| HORVU2Hr1G036390.6 | Barley | plastid | 25.0 | 26.67 |
| HORVU5Hr1G076600.1 | Barley | plastid | 22.57 | 25.1 |
| HORVU3Hr1G068630.1 | Barley | mitochondrion | 12.85 | 24.34 |
| HORVU4Hr1G042970.6 | Barley | cytosol, golgi, nucleus | 18.4 | 16.21 |
Protein Annotations
| MapMan:19.2.6.1.1.6 | Gene3D:3.60.20.10 | EMBL:AK360106 | UniProt:F2D894 | GO:GO:0000502 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0019773 | GO:GO:0051603 | EnsemblPlantsGene:HORVU6Hr1G017500 | EnsemblPlants:HORVU6Hr1G017500.1 | InterPro:IPR023332 | InterPro:IPR029055 |
| InterPro:Ntn_hydrolases_N | PFAM:PF00227 | PFAM:PF10584 | ScanProsite:PS00388 | PFscan:PS51475 | PANTHER:PTHR11599 |
| PANTHER:PTHR11599:SF12 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_alpha1 | InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | SMART:SM00948 |
| SUPFAM:SSF56235 | MEROPS:T01.976 | UniParc:UPI0001B8378E | SEG:seg | : | : |
Description
Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:F2D894]
Coordinates
chrchr6H:-:41299028..41302263
Molecular Weight (calculated)
31253.6 Da
IEP (calculated)
4.938
GRAVY (calculated)
-0.333
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRNQYDTDV TTWSPQGRLF QVEYAMEAVK QGSACVGLRS ATHAVLAAAN KSANELSSHQ RKVFRVADHA GVALAGLTAD GRVLSRFLRN ECINHAFVYD
101: APLPVSRLAL RLADKAQVCT QRSWKRPYGV GLLVAGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFEKFN AYTPDELIKD ALSAIKETLQ
201: GEKLTSSNCT IAIVGRREDG TVEPFSMIDS KRIQEIIDSM EAADEAPAAD APAESSSMQE DRGDAPPAAD APAADEPAAP DAPAPMDI
101: APLPVSRLAL RLADKAQVCT QRSWKRPYGV GLLVAGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFEKFN AYTPDELIKD ALSAIKETLQ
201: GEKLTSSNCT IAIVGRREDG TVEPFSMIDS KRIQEIIDSM EAADEAPAAD APAESSSMQE DRGDAPPAAD APAADEPAAP DAPAPMDI
001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERKFESFQ ESSKEDLIKD AIMAIRETLQ
201: GETLKSSLCT VSVLGVDEPF HFLDQESIQK VIDTFEKVPE EEEDAGEGEA EPEAAPGAAG TGEQGGSGDQ DVAPMEI
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERKFESFQ ESSKEDLIKD AIMAIRETLQ
201: GETLKSSLCT VSVLGVDEPF HFLDQESIQK VIDTFEKVPE EEEDAGEGEA EPEAAPGAAG TGEQGGSGDQ DVAPMEI
Arabidopsis Description
PAF2Proteasome subunit alpha type-1-B [Source:UniProtKB/Swiss-Prot;Acc:O23712]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.