Factsheet for HORVU4Hr1G042970.6

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, nucleus
MultiLoc:	nucleus
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G051730.1	Barley	cytosol	33.95	89.52
HORVU5Hr1G083350.1	Barley	cytosol	44.95	59.04
HORVU7Hr1G057390.2	Barley	cytosol, nucleus, plastid	44.65	51.41
HORVU4Hr1G040770.1	Barley	cytosol	18.96	26.16
HORVU3Hr1G068660.1	Barley	cytosol	18.65	25.96
HORVU3Hr1G068630.1	Barley	mitochondrion	11.31	24.34
HORVU5Hr1G038710.1	Barley	cytosol	14.37	23.62
HORVU2Hr1G036390.6	Barley	plastid	18.96	22.96
HORVU7Hr1G027220.2	Barley	cytosol	17.43	21.51
HORVU6Hr1G017500.1	Barley	cytosol	16.21	18.4
HORVU4Hr1G076770.2	Barley	cytosol	14.98	17.38
HORVU0Hr1G001180.1	Barley	cytosol	12.54	16.47
HORVU1Hr1G068490.1	Barley	cytosol	12.54	16.47
HORVU5Hr1G076600.1	Barley	plastid	11.93	15.06

Protein Annotations

MapMan:19.2.6.1.1.4	Gene3D:3.60.20.10	UniProt:A0A287NWE0	ncoils:Coil	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	EnsemblPlantsGene:HORVU4Hr1G042970
EnsemblPlants:HORVU4Hr1G042970.6	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFscan:PS51475
PANTHER:PTHR11599	PANTHER:PTHR11599:SF106	InterPro:Proteasome_alpha-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000B480556
SEG:seg	:	:	:	:	:

Description

Proteasome endopeptidase complex [Source:UniProtKB/TrEMBL;Acc:A0A287NWE0]

Coordinates

chrchr4H:+:341655197..341661325

Molecular Weight (calculated)

36567.0 Da

IEP (calculated)

11.473

GRAVY (calculated)

-0.706

Length

327 amino acids

Sequence
(BLAST)

001: MLVLLRPNQA ELTLADTVDA GASRDLTRPP WRGSSPARDK TSHSRKKGKK KPVPLPIEIS VSLLSTENAP STTRRAPPEN LKREPPCTWS IDPIPARKPL
101: PPPAYHPPPP PPPPPRGRPQ GQRRRRRPRH RHRRPRRREE VHPQAPGLQV PSNPLPPSRS PLLPTSPSGP QISSRRSVRK IASLDTHVAL ACVGLKADTR
201: VLINRARVEC QSHRFTVEDP ITVEYITRYI VGLQQKYTQS GGVRPFGLST LIVGFDPYTD KPALYQTDPS GTFSAWKANA TRRNSNSTRE FLEKNYKDTS
301: GKETIKLTIR ALLEVTFLLL SVLFDAI

Best Arabidopsis Sequence Match ( AT3G51260.1 )
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY TRIPALYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SAGQETVKLA IRALLEVVES
201: GGKNIEVAVM TREEGVLKQL EEEEIDIIVA EIEAEKAAAE AAKKGPAKET

Arabidopsis Description

PAD1Proteasome endopeptidase complex [Source:UniProtKB/TrEMBL;Acc:A0A178VPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.