Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G028190.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G05840.1 | HORVU1Hr1G028190.1 | AT5G40580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G295500.1 | Wheat | cytosol, golgi, plastid, unclear | 86.88 | 99.59 |
| TraesCS4A01G008300.1 | Wheat | cytosol, golgi, plastid, unclear | 86.88 | 99.59 |
| Zm00001d027896_P001 | Maize | cytosol, extracellular, mitochondrion | 82.98 | 95.12 |
| EER92751 | Sorghum | cytosol | 82.98 | 95.12 |
| Zm00001d048271_P001 | Maize | cytosol, extracellular | 82.62 | 94.72 |
| Os03t0180400-01 | Rice | cytosol | 82.62 | 94.72 |
| GSMUA_Achr6P11610_001 | Banana | cytosol | 78.01 | 89.43 |
| GSMUA_Achr10P... | Banana | cytosol | 77.31 | 88.62 |
| Solyc12g009140.1.1 | Tomato | extracellular | 75.18 | 86.18 |
| PGSC0003DMT400007520 | Potato | cytosol, extracellular | 75.18 | 86.18 |
| KRH26034 | Soybean | nucleus | 74.82 | 85.77 |
| KRH55422 | Soybean | cytosol, endoplasmic reticulum | 74.11 | 84.96 |
| AT2G05840.1 | Thale cress | cytosol | 73.4 | 84.15 |
| AT5G35590.1 | Thale cress | cytosol | 73.05 | 83.74 |
| Bra015170.1-P | Field mustard | cytosol | 72.69 | 83.33 |
| VIT_09s0002g00980.t01 | Wine grape | cytosol | 72.69 | 83.33 |
| CDY18045 | Canola | cytosol | 72.69 | 83.33 |
| CDY33398 | Canola | cytosol, extracellular | 72.69 | 83.33 |
| CDY50408 | Canola | cytosol, extracellular | 71.99 | 83.2 |
| Bra013157.1-P | Field mustard | cytosol | 71.99 | 82.52 |
| CDX93103 | Canola | cytosol | 72.34 | 77.57 |
| GSMUA_Achr3P02110_001 | Banana | cytosol | 30.14 | 62.04 |
| HORVU5Hr1G083350.1 | Barley | cytosol | 30.85 | 34.94 |
| HORVU3Hr1G068660.1 | Barley | cytosol | 28.37 | 34.04 |
| HORVU4Hr1G040770.1 | Barley | cytosol | 26.24 | 31.22 |
| HORVU6Hr1G051730.1 | Barley | cytosol | 13.48 | 30.65 |
| HORVU1Hr1G068490.1 | Barley | cytosol | 26.95 | 30.52 |
| HORVU0Hr1G001180.1 | Barley | cytosol | 26.95 | 30.52 |
| HORVU7Hr1G057390.2 | Barley | cytosol, nucleus, plastid | 30.5 | 30.28 |
| HORVU7Hr1G027220.2 | Barley | cytosol | 27.3 | 29.06 |
| HORVU2Hr1G036390.6 | Barley | plastid | 27.3 | 28.52 |
| HORVU5Hr1G038710.1 | Barley | cytosol | 19.86 | 28.14 |
| HORVU6Hr1G017500.1 | Barley | cytosol | 27.66 | 27.08 |
| HORVU5Hr1G076600.1 | Barley | plastid | 20.92 | 22.78 |
| HORVU3Hr1G068630.1 | Barley | mitochondrion | 12.06 | 22.37 |
| HORVU4Hr1G042970.6 | Barley | cytosol, golgi, nucleus | 17.38 | 14.98 |
Protein Annotations
| MapMan:19.2.6.1.1.1 | UniProt:A0A287PQS8 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 |
| GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005839 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 | GO:GO:0051603 |
| EnsemblPlantsGene:HORVU4Hr1G076770 | EnsemblPlants:HORVU4Hr1G076770.2 | InterPro:IPR023332 | InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 |
| PFAM:PF10584 | ScanProsite:PS00388 | PFscan:PS51475 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF54 | InterPro:Proteasome_alpha-type |
| InterPro:Proteasome_asu_N | InterPro:Proteasome_sua/b | InterPro:Proteasome_subunit_alpha6 | SMART:SM00948 | SUPFAM:SSF56235 | UniParc:UPI000B473C5F |
Description
Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A287PQS8]
Coordinates
chrchr4H:+:601704623..601707697
Molecular Weight (calculated)
31532.7 Da
IEP (calculated)
8.080
GRAVY (calculated)
-0.262
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRGSGAGYD RHITIFSPEG RLYQVEYAFK AVKSAGVTSI GVRGKDSVCV VTQKKVPVSL PAPGRSHLFA APSLARRNCE FGRLSPVMWF WLQDKLLDDT
101: SITHLFSITK YTGLLATGLT ADARSLVSQA RNEAAEFRKK WGYEMPVDVL AKWIADKAQI YTQHAYMRPL GVVAMVLGYD EEKNAQLFKC DPAGHFFGHK
201: ATSAGLKEQE AINFLEKKMK DSPQFTYDET VQIAISALQS VLQEDFKATE IEVGVVRKED RVFRSLTTEE IDQHLTAISE RD
101: SITHLFSITK YTGLLATGLT ADARSLVSQA RNEAAEFRKK WGYEMPVDVL AKWIADKAQI YTQHAYMRPL GVVAMVLGYD EEKNAQLFKC DPAGHFFGHK
201: ATSAGLKEQE AINFLEKKMK DSPQFTYDET VQIAISALQS VLQEDFKATE IEVGVVRKED RVFRSLTTEE IDQHLTAISE RD
001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD
Arabidopsis Description
PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.