Factsheet for TraesCS4D01G295500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G122700.1
TraesCS1B01G141900.1
TraesCS1D01G123600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05840.1	TraesCS1A01G122700.1	AT5G40580.1	21798944
AT2G05840.1	TraesCS1B01G141900.1	AT5G40580.1	21798944
AT2G05840.1	TraesCS1D01G123600.1	AT5G40580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G008300.1	Wheat	cytosol, golgi, plastid, unclear	99.19	99.19
Os03t0180400-01	Rice	cytosol	95.12	95.12
Zm00001d027896_P001	Maize	cytosol, extracellular, mitochondrion	94.72	94.72
EER92751	Sorghum	cytosol	94.72	94.72
Zm00001d048271_P001	Maize	cytosol, extracellular	94.31	94.31
GSMUA_Achr6P11610_001	Banana	cytosol	89.84	89.84
GSMUA_Achr10P...	Banana	cytosol	89.02	89.02
HORVU4Hr1G076770.2	Barley	cytosol	99.59	86.88
PGSC0003DMT400007520	Potato	cytosol, extracellular	86.59	86.59
Solyc12g009140.1.1	Tomato	extracellular	86.59	86.59
KRH26034	Soybean	nucleus	85.37	85.37
KRH55422	Soybean	cytosol, endoplasmic reticulum	84.55	84.55
AT2G05840.1	Thale cress	cytosol	83.74	83.74
VIT_09s0002g00980.t01	Wine grape	cytosol	83.74	83.74
AT5G35590.1	Thale cress	cytosol	83.33	83.33
CDY33398	Canola	cytosol, extracellular	82.93	82.93
CDY18045	Canola	cytosol	82.93	82.93
Bra015170.1-P	Field mustard	cytosol	82.93	82.93
CDY50408	Canola	cytosol, extracellular	82.11	82.79
Bra013157.1-P	Field mustard	cytosol	82.11	82.11
CDX93103	Canola	cytosol	82.52	77.19
GSMUA_Achr3P02110_001	Banana	cytosol	34.96	62.77
TraesCS2D01G177600.1	Wheat	mitochondrion	54.88	50.37
TraesCS7D01G272300.1	Wheat	cytosol	35.77	35.34
TraesCS2D01G198400.1	Wheat	cytosol	32.52	34.04
TraesCS3D01G285400.1	Wheat	cytosol	32.52	34.04
TraesCS4D01G157700.1	Wheat	peroxisome	30.08	31.22
TraesCS1D01G307800.1	Wheat	cytosol	30.49	30.12
TraesCS5D01G295300.1	Wheat	cytosol	30.49	30.12
TraesCS7D01G129900.1	Wheat	cytosol	30.49	30.0
TraesCS5D01G121300.1	Wheat	peroxisome	25.61	26.58
TraesCS6D01G084800.1	Wheat	golgi	30.89	26.39

Protein Annotations

MapMan:19.2.6.1.1.1	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF54	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	InterPro:Proteasome_subunit_alpha6	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:TraesCS4D01G295500	EnsemblPlants:TraesCS4D01G295500.1
TIGR:cd03754	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:465360530..465363349

Molecular Weight (calculated)

27437.7 Da

IEP (calculated)

6.800

GRAVY (calculated)

-0.315

Length

246 amino acids

Sequence
(BLAST)

001: MSRGSGAGYD RHITIFSPEG RLYQVEYAFK AVKSAGVTSI GVRGKDSVCV VTQKKVPDKL LDDTSITHLF SITKYTGLLA TGLTADARSL VSQARNEAAE
101: FRKKWGYEMP VDVLAKWIAD KAQIYTQHAY MRPLGVVAMV LGYDEEKNAQ LFKCDPAGHF FGHKATSAGL KEQEAINFLE KKMKDSPQFS YDETVQIAIS
201: ALQSVLQEDF KATEIEVGVV RKEDRVFRSL TTEEIDQHLT AISERD

Best Arabidopsis Sequence Match ( AT2G05840.1 )
(BLAST)

001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD

Arabidopsis Description

PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.