Factsheet for TraesCS6D01G084800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G126000.1	Wheat	cytosol	99.31	98.96
TraesCS6A01G097800.1	Wheat	unclear	98.96	98.96
HORVU6Hr1G017500.1	Barley	cytosol	98.61	98.61
Os02t0133800-01	Rice	plastid	85.76	91.48
Zm00001d015180_P001	Maize	extracellular, mitochondrion, plasma membrane	84.03	88.32
EES04466	Sorghum	cytosol	80.56	85.93
GSMUA_Achr10P...	Banana	cytosol	71.88	78.11
PGSC0003DMT400009588	Potato	cytosol	65.97	69.34
Bra014068.1-P	Field mustard	cytosol	64.93	69.26
PGSC0003DMT400039976	Potato	cytosol	65.28	68.86
CDY17035	Canola	cytosol	64.93	68.5
CDX71518	Canola	cytosol	64.24	68.27
CDY47593	Canola	cytosol	64.58	68.13
VIT_18s0001g12760.t01	Wine grape	cytosol	67.01	67.96
AT5G42790.1	Thale cress	cytosol	65.28	67.63
CDY21248	Canola	cytosol	32.64	67.14
CDY52371	Canola	cytosol	63.89	66.91
Bra027456.1-P	Field mustard	cytosol	63.89	66.91
KRH05846	Soybean	cytosol, nucleus	65.97	66.9
CDY02422	Canola	cytosol	62.85	66.79
Bra035332.1-P	Field mustard	cytosol	62.85	66.79
AT1G47250.1	Thale cress	cytosol	64.24	66.79
CDX95156	Canola	cytosol	64.24	66.79
KRH38836	Soybean	cytosol, nucleus	65.62	66.32
KRH15173	Soybean	cytosol, nucleus	65.62	65.62
Solyc04g080590.2.1	Tomato	extracellular	65.97	64.19
KRH20407	Soybean	cytosol	33.33	62.75
TraesCS4D01G157700.1	Wheat	peroxisome	29.51	35.87
TraesCS1D01G307800.1	Wheat	cytosol	28.12	32.53
TraesCS7D01G272300.1	Wheat	cytosol	28.12	32.53
TraesCS2D01G198400.1	Wheat	cytosol	26.39	32.34
TraesCS3D01G285400.1	Wheat	cytosol	26.39	32.34
TraesCS5D01G295300.1	Wheat	cytosol	27.78	32.13
TraesCS4D01G295500.1	Wheat	cytosol, golgi, plastid, unclear	26.39	30.89
TraesCS5D01G121300.1	Wheat	peroxisome	25.35	30.8
TraesCS7D01G129900.1	Wheat	cytosol	25.69	29.6
TraesCS2D01G177600.1	Wheat	mitochondrion	24.31	26.12

Protein Annotations

MapMan:19.2.6.1.1.6	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584
ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF12	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha1
InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:TraesCS6D01G084800	EnsemblPlants:TraesCS6D01G084800.1
TIGR:cd03749	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:49864557..49867406

Molecular Weight (calculated)

31312.7 Da

IEP (calculated)

5.064

GRAVY (calculated)

-0.333

Length

288 amino acids

Sequence
(BLAST)

001: MFRNQYDTDV TTWSPQGRLF QVEYAMEAVK QGSACVGLRS ATHAVLAAAN KSANELSSHQ RKVFRVADHA GVALAGLTAD GRVLSRFLRN ECINHAFVYD
101: APLPVSRLAL RLADKAQVCT QRSWKRPYGV GLLVAGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFEKFN AYTPDELIKD ALSAIKETLQ
201: GEKLTSSNCT IAIVGRKEDG TVEPFSMIDS KRIQEIIDSM EAADEAPAAD VPAESSSMQE DRGDAPAARD APAADEPAAP DAPAPMDI

Best Arabidopsis Sequence Match ( AT5G42790.1 )
(BLAST)

001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFG DSSREDLIKD AILAVRETLQ
201: GETLKSSLCT VAILGVDEPF HFLDQEAIQK VIDTFEKVPE EEEGEGEAGE GEAEAAEAAP AERGGGVAGD QDVAPMEM

Arabidopsis Description

PAF1Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:A0A178UFX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.