Factsheet for Bra014068.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014069.1-P
Bra032216.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47250.1	Bra014069.1-P	AT1G47260.1	21798944
AT1G47250.1	Bra032216.1-P	AT1G47260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17035	Canola	cytosol	99.26	98.17
CDY47593	Canola	cytosol	98.89	97.8
AT1G47250.1	Thale cress	cytosol	94.81	92.42
Bra027456.1-P	Field mustard	cytosol	93.33	91.64
Bra035332.1-P	Field mustard	cytosol	91.11	90.77
VIT_18s0001g12760.t01	Wine grape	cytosol	81.11	77.11
PGSC0003DMT400009588	Potato	cytosol	77.78	76.64
KRH38836	Soybean	cytosol, nucleus	80.74	76.49
KRH05846	Soybean	cytosol, nucleus	80.37	76.41
GSMUA_Achr10P...	Banana	cytosol	74.81	76.23
KRH15173	Soybean	cytosol, nucleus	80.74	75.69
PGSC0003DMT400039976	Potato	cytosol	75.93	75.09
Solyc04g080590.2.1	Tomato	extracellular	77.78	70.95
Os02t0133800-01	Rice	plastid	70.37	70.37
Zm00001d015180_P001	Maize	extracellular, mitochondrion, plasma membrane	68.89	67.88
EES04466	Sorghum	cytosol	67.78	67.78
KRH20407	Soybean	cytosol	38.15	67.32
TraesCS6A01G097800.1	Wheat	unclear	70.0	65.62
TraesCS6B01G126000.1	Wheat	cytosol	70.0	65.4
HORVU6Hr1G017500.1	Barley	cytosol	69.63	65.28
TraesCS6D01G084800.1	Wheat	golgi	69.26	64.93
Bra030921.1-P	Field mustard	cytosol	32.22	36.71
Bra035099.1-P	Field mustard	cytosol	30.74	35.32
Bra008402.1-P	Field mustard	cytosol	30.74	35.32
Bra036824.1-P	Field mustard	cytosol	31.85	34.4
Bra012861.1-P	Field mustard	cytosol	31.85	34.4
Bra003618.1-P	Field mustard	cytosol	30.74	33.88
Bra031328.1-P	Field mustard	cytosol, mitochondrion	31.11	33.6
Bra023851.1-P	Field mustard	cytosol	30.37	32.8
Bra034316.1-P	Field mustard	cytosol	28.52	30.92
Bra013157.1-P	Field mustard	cytosol	28.15	30.89
Bra015170.1-P	Field mustard	cytosol	28.15	30.89
Bra037085.1-P	Field mustard	cytosol	30.74	26.95

Protein Annotations

MapMan:19.2.6.1.1.6	Gene3D:3.60.20.10	EnsemblPlantsGene:Bra014068	EnsemblPlants:Bra014068.1	EnsemblPlants:Bra014068.1-P	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005839	GO:GO:0005886
GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009506	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	UniProt:M4DC55	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF12	InterPro:Proteasome_alpha-type
InterPro:Proteasome_alpha1	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0002546AED
SEG:seg	:	:	:	:	:

Description

AT1G47250 (E=1e-130) PAF2 | PAF2; endopeptidase/ peptidase/ threonine-type endopeptidase

Coordinates

chrA08:-:3847885..3849523

Molecular Weight (calculated)

29816.8 Da

IEP (calculated)

4.699

GRAVY (calculated)

-0.372

Length

270 amino acids

Sequence
(BLAST)

001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLASVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV RLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERRFESFN ESSREDLIKD AILAIRETLQ
201: GETLKSSLCT VSVLGVDEPF HFLDQDSIQK VIDTFENVPE EEEDGGEAEA EAAAAEQGGA GDQDVAPMEM

Best Arabidopsis Sequence Match ( AT1G47250.1 )
(BLAST)

001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERKFESFQ ESSKEDLIKD AIMAIRETLQ
201: GETLKSSLCT VSVLGVDEPF HFLDQESIQK VIDTFEKVPE EEEDAGEGEA EPEAAPGAAG TGEQGGSGDQ DVAPMEI

Arabidopsis Description

PAF2Proteasome subunit alpha type-1-B [Source:UniProtKB/Swiss-Prot;Acc:O23712]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.